Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq39 134 1e-26 seq13 125 6e-24 >seq39 Length=88371 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| || ||||| || || || |||||||| |||| | ||||| | |||| || Sbjct 30782 ACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCG 30841 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| || | ||||| || || || ||||||||||| ||||||||| Sbjct 30842 AGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGA 30901 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || |||||| | || | || || || | ||| ||||| | || | || ||| Sbjct 30902 ATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAATGTAATAGTCTTG 30961 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || || || |||||||| Sbjct 30962 CCAGTCAAAGTCTTGACGAAGATCTGCAT 30990 >seq13 Length=129688 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||||| || || || |||||||| |||| | ||||| | |||| || Sbjct 70970 ACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCG 71029 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| || | ||||| || || || ||||||||||| || |||||| Sbjct 71030 AGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 71089 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || |||||| | || | || || || | ||| ||||| | |||| || ||| Sbjct 71090 ATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGATAGTCTTG 71149 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || || || |||||||| Sbjct 71150 CCAGTCAAAGTCTTGACGAAGATCTGCAT 71178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396166825587414