Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq633 114 1e-20 seq39 113 3e-20 seq13 113 3e-20 seq1283 104 2e-17 seq864 84.2 2e-11 >seq633 Length=24846 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| ||||||||| || |||||||| || || || ||||| || Sbjct 19923 CCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 19982 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | ||||||||| ||||| || ||||| || || |||| |||| Sbjct 19983 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 20042 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || || | | | || || | ||||||| Sbjct 20043 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 20102 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | || ||||| || ||||| | ||||| || |||||||||||| || Sbjct 20103 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTG 20153 >seq39 Length=88371 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || |||| || ||||| || || ||| || ||||||||||| || || Sbjct 30764 CCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 30823 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | |||| | || || | ||||||||| ||||| || |||||||| || || | |||| Sbjct 30824 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 30883 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || |||||| |||||| | | | | || || | || || Sbjct 30884 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACT 30943 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || |||||||| || || || |||||||| Sbjct 30944 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 30990 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||||||||| ||| | || |||| || | |||||| || || || Sbjct 31328 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 31387 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | ||| | || |||||||| |||||| || ||| Sbjct 31388 GATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGAATCTTCGACTTGACATT 31447 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || |||| ||| ||||| | ||||| || || || || | || || || Sbjct 31448 GTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGAC 31507 Query 48755 AAAAATCTGCATCGT 48769 || || ||||| || Sbjct 31508 GAAGATTTGCATGGT 31522 >seq13 Length=129688 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || |||| |||||||| | || ||| || ||||||||||| || || Sbjct 70952 CCACCCCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 71011 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | |||| | || || | ||||||||| ||||| || |||||||| || || | |||| Sbjct 71012 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 71071 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| |||||| |||||| | | | | || || | || || Sbjct 71072 ATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACT 71131 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||||||| || || || |||||||| Sbjct 71132 TCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 71178 >seq1283 Length=10397 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || |||||||| || || || ||||| || | | || Sbjct 2755 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGG 2696 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| || ||||| || || |||| ||||| ||||||| Sbjct 2695 CCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCC 2636 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||| | || Sbjct 2635 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 2576 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || ||||| | ||||| || |||||||||||| || Sbjct 2575 ATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTG 2534 >seq864 Length=18104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || ||||| ||||| || || || ||||| |||| || | |||||| || || || ||| Sbjct 8492 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 8433 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 | |||||| ||||| | ||||| |||||||||||| || || || ||| | Sbjct 8432 AATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 8373 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || || | ||| ||||| | || || || || ||||||| ||| || || ||| Sbjct 8372 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 8313 Query 48759 ATCTGCATCGTGT 48771 ||| || |||| Sbjct 8312 --CTGAATGGTGT 8302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380830344875946