Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq891 190 1e-42 seq867 190 1e-42 seq39 127 1e-23 seq13 114 8e-20 >seq891 Length=17630 Score = 190 bits (210), Expect = 1e-42 Identities = 468/706 (66%), Gaps = 19/706 (3%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | |||||||| |||||||| ||||| | || |||||||| |||| ||||| Sbjct 12012 CGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCTCAGACTACG 11953 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| |||||||||| || || || || |||| | || | |||||| |||| Sbjct 11952 ATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGGCCCGT 11893 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 || ||||| ||||| ||||| || | || || | || || || | |||||| Sbjct 11892 TTCGAAGAGCTTTGTCAGGATCTTTTCCGCTCCACCATCCAGCCTGTCGACCGTGTTCTC 11833 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | || | || |||||||||| ||||| ||||| ||||| | || || ||||| || Sbjct 11832 ACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTTCCACC 11773 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTT-TCATCATATTTTAATGGTAAAAAGTTAAATGA 475785 | ||||| ||| ||||| | | || || ||||| |||||| || || Sbjct 11772 CGTATTCCCCGAATCC-AGAAACTCATCTCCGACTACTTTAACGGTAAAGAGCCCAAC-- 11716 Query 475786 AAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 |||| || || |||||||| ||||| || || || || |||||||| || ||||| | Sbjct 11715 AAGTCTATCAACCCTGATGAGGCTGTCGCGTACGGTGCCGCTGTCCAGGCTGCTATCCTG 11656 Query 475844 TCAGGTCAATC--------AGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTC 475895 || ||| | | || | | ||| |||| | ||| ||||||| | | Sbjct 11655 TCTGGTGACACTTCTTCCAAGTCTACCAACGAAATCTTGTTGC-----TTGACGTCGCGC 11601 Query 475896 CACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATA 475955 | | || | ||| |||| || | || || || ||||| || || ||| | || | Sbjct 11600 CTTTGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCTCGTAACA 11541 Query 475956 CTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTG 476015 | | || ||| ||| || || | || || || || | ||||| || || | | Sbjct 11540 CAACCATTCCAACCAAGAAGTCTGAGGTTTTCTCGACCTTCTCTGACAACCAGCCCGGGG 11481 Query 476016 TAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAA 476075 | ||| || ||||||| || || || | ||| || || || ||| | | || | Sbjct 11480 TGCTCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTAATGGGCA 11421 Query 476076 CTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTT 476135 ||| | ||| || ||||| || |||||| | || |||||||| ||||||||||| | Sbjct 11420 AGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGTTACCT 11361 Query 476136 TTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| | ||||| |||||||| | ||||| ||||| ||| || Sbjct 11360 TTGATCTCGATGCCAATGGTATCATGAATGTGTCTGCTGTTGAGAA 11315 >seq867 Length=18020 Score = 190 bits (210), Expect = 1e-42 Identities = 464/694 (67%), Gaps = 13/694 (2%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | |||||||| |||||||| ||||| | || |||||||| |||| ||||| Sbjct 12258 CGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCTCAGACTACG 12199 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| |||| || || || || || || |||| | || | |||||| |||| Sbjct 12198 ATTGAGATTGACTCCCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGGCCCGT 12139 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 || ||||| |||| ||||| || || || || | || || || | |||||| Sbjct 12138 TTCGAAGAGCTTTGCCAGGATCTTTTCCGATCCACCATCCAGCCTGTCGACCGTGTTCTC 12079 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | || | || |||||||||| ||||| ||||| ||||| | || || ||||| || Sbjct 12078 ACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTTCCACC 12019 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTT-TCATCATATTTTAATGGTAAAAAGTTAAATGA 475785 ||||||| || ||||| | | || || || || || ||| || || Sbjct 12018 CGAATTCCCCGTATCC-AGAAACTCATCTCCGACTACTTCAACGGCAAAGAGCCCAAC-- 11962 Query 475786 AAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 |||| || || |||||||| |||||||| || || || |||||||| || ||||| | Sbjct 11961 AAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTGCTATCCTG 11902 Query 475844 TCAGGTCAA---TCAGACGAGAA-ACTAAATAA-TATTGTACTTGTTGACGTAACTCCAC 475898 || ||| | || | || ||||| || | |||| | ||||||| |||| Sbjct 11901 TCTGGTGACACTTCTTCCAAGTCTACTAACGAAATCTTGT--TGCTTGACGTCGCTCCTT 11844 Query 475899 TTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTC 475958 | || | ||| | || || | || || || ||||| || |||||| | | || || Sbjct 11843 TGTCTCTGGGTATCGAGACCGCCGGTGGAATGATGACGAAGCTTATTCCCCGTAACACAA 11784 Query 475959 CTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAA 476018 | || ||| ||| || || |||| || || || | |||||| || || | || Sbjct 11783 CCATTCCAACCAAGAAGTCCGAAGTTTTCTCGACCTTTTCTGACAACCAGCCTGGGGTGC 11724 Query 476019 CCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTT 476078 |||||| ||||||| || || || | ||| || || || ||| | || | | Sbjct 11723 TCATCCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTGATGGGCAAGT 11664 Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138 || | ||| || ||||| || |||||| | || |||||||| ||||||||||| |||| Sbjct 11663 TTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGTTACCTTTG 11604 Query 476139 ATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 || | || || |||||||| | ||||| |||| Sbjct 11603 ATCTCGACGCCAATGGTATCATGAATGTCTCTGC 11570 >seq39 Length=88371 Score = 127 bits (140), Expect = 1e-23 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || || |||||||| || || || || ||||||| ||||| Sbjct 31299 CGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTG 31358 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || || || ||||||||||| || || ||||| || || ||||| || |||||| Sbjct 31359 CGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCT 31418 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| |||||||| |||||| ||||||||||||| | | | || || Sbjct 31419 TCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGA-CCTCGAG 31477 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || |||||||| ||||| ||||| ||||| Sbjct 31478 AGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 31516 Score = 107 bits (118), Expect = 1e-17 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAGT 480610 || ||||| || || ||||| | || ||||| || | || || || ||| || || Sbjct 30542 CGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGCGT 30600 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||| || |||||||| ||||||||||| ||||| || |||||||| || || Sbjct 30601 GCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACC 30660 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| || |||||||| ||||||| || || ||||||| | | | || ||| Sbjct 30661 CTCCTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAA 30720 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||| || || || | ||||| || |||||||| Sbjct 30721 -GGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTG 30759 Score = 96.9 bits (106), Expect = 2e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | ||| || ||| || || || ||| || || | | |||| Sbjct 30770 CGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTT 30829 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || ||||| |||||||| || || || || || ||||| ||||| ||| Sbjct 30830 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 30889 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| ||||||||||| || ||| || || ||||| | | | | ||| | Sbjct 30890 TCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAAT 30949 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || | |||||| ||||| || || Sbjct 30950 GTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTG 30987 >seq13 Length=129688 Score = 114 bits (126), Expect = 8e-20 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| ||||| || || |||| | |||||||| || | ||||| || ||| || | Sbjct 70729 ACGCAGACGAAGCACGAGATACAAAGTACTTTCCTTCTGGATGTTATAGTC-GCTCAGCG 70787 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||||| || |||||||| ||||||||||| ||||| || || ||||| |||| Sbjct 70788 TGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTC 70847 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | ||||| || |||||||| |||||||| || || ||||||| | | | || || Sbjct 70848 CCTCCTTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGAAGATTCGACTTCCA 70907 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||| ||||| || || || | ||||| || |||||||| Sbjct 70908 A-GGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTG 70947 Score = 100 bits (110), Expect = 2e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| ||||| | | || ||||| ||||||||||| || || ||||| || Sbjct 71529 TTGTAGTCAGCAAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGC 71588 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || ||||| ||||| || |||||||| |||||| ||||| |||||| Sbjct 71589 TGGTCGGGGGGGATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATGGTATCA 71648 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || || ||||| || || |||||||| ||||| ||||| ||||| Sbjct 71649 GACGACTCGA-CCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 71704 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||||||||| ||||| || ||| || | ||| || || || || || Sbjct 71185 ACGGAGGCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGT 71244 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| ||||| || || | || || |||||||||||||| || Sbjct 71245 ACGACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACC 71304 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACA 480698 |||||| || |||||||| ||||||| Sbjct 71305 TTCCTTATCCTGAATCTTCGATTTGACA 71332 Score = 86.0 bits (94), Expect = 4e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | ||| | ||| || || || ||| || || | | |||| Sbjct 70958 CGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTT 71017 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || ||||| |||||||| || || || || || ||||| ||||| ||| Sbjct 71018 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 71077 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||||||||||||||| || ||| || || ||||| | | | | || ||| Sbjct 71078 TCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAA- 71136 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || | |||||| ||||| || || Sbjct 71137 TGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTG 71175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267188243129096