Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_020490.2 Length=44714 Score E Sequences producing significant alignments: (Bits) Value seq14008 390 3e-104 >seq14008 Length=274 Score = 390 bits (432), Expect = 3e-104 Identities = 253/275 (92%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 30449 TTTCTGGTGGCTCACAATGGGTATCAGCTATCATTAGCGCTATGGCTAGATTTC-TTTCA 30507 |||||||||| | ||||||||||||| || | || || ||| ||| ||||| | || Sbjct 1 TTTCTGGTGGAGCGCAATGGGTATCAGGAATTGTCAGTGCCATGTCTA-ATTTCGTGTCT 59 Query 30508 AGTGTGATTAGTGGTTTTGTTAATGCTGTTTCACAAGTCCAATCCGGAATGCAACGTGCT 30567 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AGCGTGATTAGTGGTTTTGTTAATGCTGTTTCACAAGTCCAATCCGGAATGCAACGTGCT 119 Query 30568 TATAGCACGATTATTGGTTTTGTCGGCCAATTTGCTAGTGCCGGAATGGATTTAATGCGT 30627 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TATAGCACAATTGTTGGTTTTGTCGGCCAATTTGCTAGTGCCGGAATGGATTTAATGCGT 179 Query 30628 GGTTTGGTTCAAGGCATCATGAATGGAATGTCATGGGTAGTCAATGCAGCACGAAACGTA 30687 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GGTTTAGTTCAAGGTATCATGAATGGAATGTCATGGGTAGTCAATGCAGCACGAAACGTA 239 Query 30688 GCCAAAAGCGCAGTCAATGCAGCTAAAAGTGCATT 30722 ||||||||||||||||| |||||||||||||| || Sbjct 240 GCCAAAAGCGCAGTCAACGCAGCTAAAAGTGCCTT 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142923980011824