Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq39 116 5e-21 seq13 107 3e-18 >seq39 Length=88371 Score = 116 bits (128), Expect = 5e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| || ||||||||||| ||||| ||| || Sbjct 30990 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 30931 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||| || |||||||| |||||||| || || || || Sbjct 30930 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 30871 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| |||||||||||||| ||| | ||||||| || || || ||| Sbjct 30870 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 30811 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || || |||||||| Sbjct 30810 ATTCAGAAGGAGTCTACTCTGCATTTAGT 30782 Score = 113 bits (124), Expect = 7e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| |||||||| || ||||||||| |||| Sbjct 30762 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 30703 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| || || || ||||| || || || ||||| || || Sbjct 30702 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAG 30643 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| || | |||| |||||| |||||||| ||||| Sbjct 30642 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGA 30608 >seq13 Length=129688 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| || ||||| ||||| ||||||||| ||| Sbjct 71178 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 71119 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||| || ||||| || |||||||| || || || || Sbjct 71118 GATACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 71059 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| |||||||||||||| ||| | ||||||| || || || ||| Sbjct 71058 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 70999 Query 156003 AT 156004 || Sbjct 70998 AT 70997 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| ||||| || || ||||||||| |||| Sbjct 70950 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 70891 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | || ||| || || || ||||| || || || ||||| || || Sbjct 70890 GATACCATCGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 70831 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| || | |||| |||||| |||||||| ||||| Sbjct 70830 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGA 70796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731660653663200