Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq39 140 6e-28 seq13 131 3e-25 >seq39 Length=88371 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | |||||||| | ||||| ||| || ||||| || || Sbjct 30761 ATACCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCG 30820 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || ||||| |||| || | || |||||||||||||| | || ||| || ||||| Sbjct 30821 GACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGG 30880 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| ||||||||| || | ||| || ||||| Sbjct 30881 GGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCA 30940 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| || || ||||| || || || | || |||||||| Sbjct 30941 ACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 30990 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||| || | || | || | || | ||| || || || |||||| Sbjct 31290 ATACCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCA 31349 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || || | || || ||||| ||||||| | ||| || ||||| Sbjct 31350 GAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGG 31409 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || || || ||||| |||| ||| ||||| || Sbjct 31410 GGGATTCCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCG 31469 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || || || | || || | || || ||||| Sbjct 31470 ACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 31519 >seq13 Length=129688 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || ||||| ||||||| ||| || ||||| || || Sbjct 70949 ATACCACCCCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCG 71008 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || ||||| |||| || | || |||||||||||||| | || ||| || ||||| Sbjct 71009 GACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGG 71068 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||||||||| || | ||| || ||||| Sbjct 71069 GGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCG 71128 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || || || ||||| || || || | || |||||||| Sbjct 71129 ACTTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 71178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984188599457700