Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq539 122 3e-22 seq15 114 4e-20 seq1026 109 2e-18 seq2746 86.0 2e-11 >seq539 Length=27760 Score = 122 bits (134), Expect = 3e-22 Identities = 321/488 (66%), Gaps = 8/488 (2%) Strand=Plus/Plus Query 133450 AAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCG 133509 ||| ||| | |||||||| ||| ||||| ||||||||| | | || || || || Sbjct 8016 AAAAAAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGCTTCGCCCAGCG 8075 Query 133510 TCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTT 133569 | || ||||| |||| || ||||| || || ||||| ||||| || ||| ||||| Sbjct 8076 CTTGGTGGCTTTCGCTGCTGTGGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCGATTTT 8135 Query 133570 TTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAG 133629 ||||| || ||||||||| | | || || || || |||||||||||||| || | Sbjct 8136 CTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTAACGAACTTATCTCCCG 8195 Query 133630 GGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACT 133689 || |||| | ||||| || |||||| | | | ||||| | || ||| | | Sbjct 8196 TGATGAGGGTTTGCACACAGACTTTGCCTGTCTGTTGCACTCGCATCTAAAGCACCGAGC 8255 Query 133690 CAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTAT 133749 || ||| | ||| | || ||||| | || || |||| |||||| || ||| | Sbjct 8256 CAGCAAGCAAGTTATTCAGGATATTATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTT 8315 Query 133750 CAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATAT 133809 | ||||||||||| | | | || ||||| | || ||| ||| || || Sbjct 8316 GACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAATACAT 8375 Query 133810 TGAATTTGTAGCTGA---CAGATTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTC 133866 ||||||||| || || | ||||| | || | ||| || ||| | ||| | Sbjct 8376 TGAATTTGTCGCCGATCGCCTATTGGTTGCTC---TTGGTAACGAAAAGGTATACAAAAC 8432 Query 133867 CGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGA 133926 |||||| || ||||| | ||||| | |||| | | | ||||| || |||||||| Sbjct 8433 CGCCAACCCCTTCGATTTCATGGAAAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGA 8492 Query 133927 G--GCGAG 133932 | ||||| Sbjct 8493 GAAGCGAG 8500 >seq15 Length=125974 Score = 114 bits (126), Expect = 4e-20 Identities = 322/488 (66%), Gaps = 10/488 (2%) Strand=Plus/Minus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 || ||| | |||||||| ||| ||||| ||||||||| | | || || || || Sbjct 19401 AAAAAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGCTTCGCCCAGCGC 19342 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTT 133569 | || ||||| |||| || |||||||| || ||||| ||||| || ||| || ||||| Sbjct 19341 TTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTT-TGCGTCGATTTT 19283 Query 133570 TTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAG 133629 ||||| || ||||||||| | | || || || || |||||||||||||| || | Sbjct 19282 CTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCG 19223 Query 133630 GGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACT 133689 || |||| | ||||| || ||||| | | | ||||| | | ||| | | Sbjct 19222 TGATGAGGGTTTGCACACAGATTTTGCATGTCTGTTGCACTCGCATCTTAAGCACCGAGC 19163 Query 133690 CAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTAT 133749 || ||| | | || | || || || | || || |||| |||||| || ||| | Sbjct 19162 CAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTT 19103 Query 133750 CAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATAT 133809 | ||||||||||| | | | || ||||| | || ||| ||| ||||| Sbjct 19102 GACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAATATAT 19043 Query 133810 TGAATTTGTAGCTGACAG---ATTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTC 133866 ||||||||| || || | ||||| | || || ||| || ||| | ||| | Sbjct 19042 TGAATTTGTCGCCGATCGTCTATTGG--TTGCACTT-GGTAACGAAAAGGTATACAAAAC 18986 Query 133867 CGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGA 133926 |||||| || ||||| | ||||||| |||| | | | ||||| || || ||||| Sbjct 18985 CGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTTTTCGA 18926 Query 133927 G--GCGAG 133932 | ||||| Sbjct 18925 GAAGCGAG 18918 >seq1026 Length=14805 Score = 109 bits (120), Expect = 2e-18 Identities = 221/324 (68%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 302497 CCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTA-TTTCTTACGGTCATATC 302555 || || ||||| || | |||||||||| | | || | | |||| || ||| ||| Sbjct 13470 CCATCTTCGCCATACAAGAACTGAATGATGTC-TCCTAATGAGTTTCGCACAGTCCCATC 13412 Query 302556 ATAAC---CAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||| || ||| | ||||| | | ||||| | || |||||||| || ||||| Sbjct 13411 ATAACGTGCACTCAAA---TCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTATCCAGT 13355 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | || || ||||| || || || ||||| | || ||| |||| || |||||||| Sbjct 13354 TTCGGCAGTCTTGACAGCAGTGTCGATAAGACCTTCTCGTCCAGCCATGGCGTGGAAGAA 13295 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| || || || | | | ||||| | || |||||||||||||| ||||| Sbjct 13294 AAACTCGGTAGGAGTGAGACCACGGAGATAGGAGTTTTCGACGAAACCACGCGCTTCGGG 13235 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || | |||| ||| ||||| || |||| || | || | |||| |||| ||||| Sbjct 13234 GGAGTAGTCGTCCTTTGTAAAATGCGGCAATGTTCGGTATTTGAAGCCAAATGGAATACG 13175 Query 302793 CTTTCCATCAACGTTCTGCTGTCC 302816 ||| || || || ||||||| || Sbjct 13174 CTTGCCTTCCACAATCTGCTGACC 13151 >seq2746 Length=1222 Score = 86.0 bits (94), Expect = 2e-11 Identities = 378/589 (64%), Gaps = 16/589 (3%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || ||||| || | | ||| || || || | | | ||||| ||| | || | | || Sbjct 450 ATCAGACCGCAGATTTCACAAACGTGAACTCGGAACGCATCCGATACTTCGAACAATCGT 509 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 | || |||| || |||||||| | ||||||||||||||| |||||||| ||||| Sbjct 510 TCTTTCAAGAAGGCAGCGGCACCGTGGGCAATCATACAATCACGTTCCATTTCTCCGAAT 569 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GATTAACCATAGG 251585 || || || ||||| | || | ||| || ||||||| || || | |||| | | ||| Sbjct 570 CGGAGGCCGCCATCTCTTGCGCGACCTTCCACAGGCTGCCGCGTCATGATTTGC-ACAGG 628 Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645 || | ||| || ||| || | ||||| || |||||| |||||| | | Sbjct 629 GCCACGAGCACGGGCGTGGATCTTGTCGTCCACCATGTGACGGAGACGTTGGTAGTAGGT 688 Query 251646 GGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAA 251701 || || | ||||| ||| | | | || || ||||| | |||| ||||| | Sbjct 689 AGGGCCAAAGAAGACTTGTGCCCTCA---ACTTCTTC-CCAGTATGGCCGTTGTACATGA 744 Query 251702 CTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCT 251761 |||| ||| | || | || || | || | ||| | || | | | | | Sbjct 745 TTTCGAATCCTCTCGACTGGTAGCCGTGCTTGCGCAGCAGTTCAGACACAGAGTCCACCG 804 Query 251762 TGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAA--CACTTTGCC 251819 ||| | | || ||| | || || | | |||| | ||| | |||||||| Sbjct 805 TGACATCAGTGAAGGGTGTGGCATCGCCCTCCATACCC--TCCAATGTAGACACTTTGCT 862 Query 251820 TAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGAT 251879 | | ||| ||| || || || ||||| || |||||| || || || ||||| Sbjct 863 CAGCAAACACTCGATCAAGTGAGCAATCGTCATTCGCGAGGGAATGGCGTGTGGGTTGAT 922 Query 251880 GATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGT 251938 ||||||||| || | | || || ||| || ||||| |||| || || ||| || Sbjct 923 GATGATGTCTGGCGTGACACCTTCCCGAGTAAACGGCATGTCCTCTTG-TCGGTAAGTGA 981 Query 251939 TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||| |||||||| ||||||||||| |||||| || ||||| Sbjct 982 CACCAATAGTGCCCTTTTGCCCGTGACGAGAGGCGAACTTGTCTCCAAT 1030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471381950269374