Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq248 224 9e-54 seq258 223 3e-53 seq39 98.7 9e-16 seq13 98.7 9e-16 >seq248 Length=42843 Score = 224 bits (248), Expect = 9e-54 Identities = 838/1300 (64%), Gaps = 54/1300 (4%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATAT-GTCGCGG-TATTGTTGCAATATTTT 138415 |||||||| || |||||||| ||| | || | | || || ||||| | ||| || | Sbjct 22839 ATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATATTG--GGAATGTTCT 22896 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 ||||| ||||| | ||||||||||| || ||||| |||| | ||| || | Sbjct 22897 GAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGACCCATAT 22956 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || | || || | || | ||| | |||||| |||||||| ||||| || || | Sbjct 22957 CGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGC 23016 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | |||||||||| ||| | |||||||| | || ||||| ||||| || || | | Sbjct 23017 GCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGGATTTGCGAGG 23076 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 | | ||||| |||||| || | || | || || || | | |||| ||||||| Sbjct 23077 TAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATATCGTGCTGCTTGATCT 23136 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| | ||| |||||||| || ||| || |||||||| ||| ||| Sbjct 23137 GCTCCTTCAAGTTGTCCCACTCCCACAACTCAGAAGGCTTGACATTCCACATGTCGAACT 23196 Query 138716 GTA----ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCT 138771 | | || |||| | |||||| ||| | | | | | ||| || |||| Sbjct 23197 GAAGAACACCTTCCGAG----GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCT 23252 Query 138772 TGCGCCAACTC----GTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 | |||| ||| | ||| | || ||| | | |||||| || ||| ||| || Sbjct 23253 TTGGCCAGCTCAAGAGAGGCTGTC----AGGGCAGCGTGGTAAATGGTCTCGAAAATTTG 23308 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAAC-GCGT 138886 || |||||| |||||||||| |||| | |||||||| || | | ||| |||| Sbjct 23309 CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGT 23367 Query 138887 CGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG 138946 |||| || || || || || || |||| || ||||| |||| || ||| ||||| Sbjct 23368 CGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTT----GCTGTTGCGA 23423 Query 138947 ----CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002 | || || || |||| ||| ||||||||||| ||||| | || || |||||||| Sbjct 23424 GCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTACGGACGACCACT 23483 Query 139003 TTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC 139061 | |||| | | | | | | | || ||||| ||| | |||| |||||||| | | Sbjct 23484 TGAGTCACCT-CGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGC 23542 Query 139062 -GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGC 139120 | || | || | ||||| | |||||| || || || || || ||| | | Sbjct 23543 AGGCAG-------GGCAAGA---GAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCAC 23592 Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 ||| || | || || | |||| |||| | || || || | ||||| || | Sbjct 23593 AGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTTTTCTGGT 23652 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 |||| || | ||| || ||||||||||| |||||| | || |||| ||||| || | Sbjct 23653 TGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGG 23712 Query 139241 TCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCG 139296 ||| | ||| | | | | | | || | || ||| || | | | Sbjct 23713 CCTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCC----ACGGCCC 23768 Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 || ||||| ||||| |||||||| | || || || || ||| |||| || | Sbjct 23769 TCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCA 23828 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | |||| || ||||||||||| | ||| | |||||| | ||||||| ||||||| Sbjct 23829 GGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAA 23888 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476 ||||| || ||||||| ||| | | | ||||| || || |||||| || | Sbjct 23889 AGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGG 23948 Query 139477 TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || | || | ||| || ||||| ||||| |||||||| || || || ||||| || Sbjct 23949 TTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCA 24008 Query 139537 ATTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | ||| || | | ||||| || || || |||| || ||| || ||||| ||| Sbjct 24009 AATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACG 24068 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGC 139633 || | ||| || | ||| | | ||| |||||||||| Sbjct 24069 CGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGC 24108 >seq258 Length=42171 Score = 223 bits (246), Expect = 3e-53 Identities = 1066/1676 (64%), Gaps = 60/1676 (4%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATAT-GTCGCGG-TATTGTTGCAATATTTT 138415 |||||||| || ||||| || ||| | || | | || || ||||| | || || | Sbjct 15683 ATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATATTGGGG--ATGTTCT 15626 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 ||||| || || | ||||||||||| || ||||| |||| | ||| || | Sbjct 15625 GAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAGAGACCCATGT 15566 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || | || || | || | ||| | |||||| |||||||| ||||| || || | Sbjct 15565 CGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGC 15506 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | |||||||||| ||| | |||||||| | || ||||| |||||||| || | | Sbjct 15505 GCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGG 15446 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 | | ||||| |||||| || | || | || || || | |||||| |||||| Sbjct 15445 TCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCT 15386 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| || ||| ||||| || || ||| || |||||||| ||| | | Sbjct 15385 GCTCCTTCAGATTGTCCCACTCCCATAACTCAGAAGGCTTGACATTCCACATGTCGAATT 15326 Query 138716 GTA----ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCT 138771 | | || |||| | |||||| ||| | | | | | ||| || |||| Sbjct 15325 GAAGAATACCTTCCGAG----GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCT 15270 Query 138772 TGCGCCAACTC----GTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 | |||| ||| | ||| | || ||| | | ||| || || ||| ||||| Sbjct 15269 TTGGCCAGCTCAAGAGAGGCTGTC----AGGGCAGCGTGGTAGATGGTCTCGAAGATCTG 15214 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAAC-GCGT 138886 || |||||| |||||||||| |||| | |||||||| || | | ||| |||| Sbjct 15213 CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGT 15155 Query 138887 CGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG 138946 | || || || || || || || |||| || ||||| |||| || ||| ||||| Sbjct 15154 CAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTT----GCTGTTGCGA 15099 Query 138947 ----CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002 | || || || |||| ||| ||||| ||||| ||||| | || || |||||||| Sbjct 15098 GCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACGACCACT 15039 Query 139003 TTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC 139061 | ||| | | | | | | | || ||||| ||| | |||| |||||||| | | Sbjct 15038 TGAGTGACCT-CGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGC 14980 Query 139062 -GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGC 139120 | || | || | ||||| | |||||| || || || || |||||| | | Sbjct 14979 AGGCAG-------GGCAAGA---GAGGCCAAGTTGCAAACAGCAACCTCATCGGGGGCAC 14930 Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 ||| || | || || | |||| || | || || || | || | || | Sbjct 14929 AGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGT 14870 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 |||| |||| ||| || ||||| ||||| |||||| | || |||| ||||| || | Sbjct 14869 TGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGG 14810 Query 139241 TCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCG 139296 ||| | ||| | | | | | | || | || ||| || | | | Sbjct 14809 ACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCC----ACGGCCC 14754 Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 || ||||| |||||||||||||| | || ||| || || ||| |||| || | Sbjct 14753 TCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCA 14694 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | |||| || ||||||||||| | ||| | |||||| | ||||||| ||||||| Sbjct 14693 GGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAG 14634 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476 ||||| || ||||||| ||| | | | ||||| || || |||||| ||| | Sbjct 14633 AGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGG 14574 Query 139477 TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || | || | ||| || || || ||||| |||||||| || || || |||||||| Sbjct 14573 TTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCA 14514 Query 139537 ATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | ||| || || ||| || || || || |||| || ||| || ||||| ||| Sbjct 14513 AATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACG 14454 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGC 139651 || | ||| || | ||| | | ||| |||||||||| ||| ||| | | | Sbjct 14453 CGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGC--CGGCAATGTAAGAGCCGG 14396 Query 139652 GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGC 139711 ||| |||| | || || || | ||||||||| || | | ||||| || | | | Sbjct 14395 TAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCAC 14336 Query 139712 A-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAG 139770 | || | | || ||||| ||||| ||||||||||||| ||| ||| || || Sbjct 14335 ACGTCTTG-AGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAA 14277 Query 139771 CATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTG 139830 || || || || || | | || || || || || ||||| ||||| ||| Sbjct 14276 CAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTG 14217 Query 139831 AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890 || | | | ||||| | | ||| || || | ||| | |||||| ||| Sbjct 14216 AAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCTCCCCAA 14157 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950 |||||||| | || ||||| | ||| || ||| || ||| | | | ||| | || | Sbjct 14156 ATACCGACGGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGT 14097 Query 139951 tttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || ||||| |||| || |||||| |||||||||| ||||||||| || Sbjct 14096 TTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTC 14041 >seq39 Length=88371 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || |||||||| | ||||| ||| || | Sbjct 30990 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 30931 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| ||||| || ||||| || || || || || Sbjct 30930 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 30871 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| ||| |||| || || || Sbjct 30870 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 30811 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || || || |||| |||| || || Sbjct 30810 ATTCAGAAGGAGTCTACTCTGCATTTAGTCCTGCGTCTGCGGGGTGG 30764 >seq13 Length=129688 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || ||||| || | ||||| ||| | | Sbjct 71178 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 71119 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | ||||| ||||| |||||||| ||||| || || || || || Sbjct 71118 GATACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 71059 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| ||| |||| || || || Sbjct 71058 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 70999 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || | || ||||| |||| |||| || || Sbjct 70998 ATTCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTGCGGGGTGG 70952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449767680820560