Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq87 127 3e-23 seq10 127 3e-23 seq258 114 2e-19 seq539 111 2e-18 seq15 111 2e-18 seq248 107 3e-17 seq14377 105 1e-16 seq394 87.8 3e-11 seq261 87.8 3e-11 >seq87 Length=67402 Score = 127 bits (140), Expect = 3e-23 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||||||||||||||| || ||| | || |||||||| || |||||| | | Sbjct 49220 CCAACTACCTCGACATCAAGCCCCTACTTGATGTTGGCTGCAAGACGGTAGCCAACATGA 49279 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 49280 TCAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 49324 >seq10 Length=138107 Score = 127 bits (140), Expect = 3e-23 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||||||||||||||| || ||| | || |||||||| ||||||||| | | Sbjct 17742 CCAACTACCTCGACATCAAGCCCCTACTTGATGTTGGCTGCAAGACAGTGGCCAACATGA 17683 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | ||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 17682 TTAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 17638 >seq258 Length=42171 Score = 114 bits (126), Expect = 2e-19 Identities = 262/393 (67%), Gaps = 15/393 (4%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || || | || |||| ||| ||||||||||||||||| | | |||||| Sbjct 14490 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTT 14431 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||||||||| || | ||| | ||| | || || | ||| || || Sbjct 14430 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA 14371 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| || || ||| ||||||||| | || ||| | || || || |||||||| || Sbjct 14370 GCCGATTCCACCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATACC 14311 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 || || |||| |||||||||| | || || || || || || | | || Sbjct 14310 GTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGT 14251 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 || || |||||||| || || | || ||| | || ||||||| | ||| Sbjct 14250 ACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTA 14191 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 ||| | | |||||| | | | ||| || ||| ||| |||| ||| Sbjct 14190 GGTCTCCAAAACGCGCTCAA-----TATTG--TCTCCCCAA----ATA----CCGACGGC 14146 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGAC 2073929 |||||||| ||||||| ||||||||||||||| Sbjct 14145 AACGCGCATAATCATGTGCTGGGGTCGCTCGAC 14113 >seq539 Length=27760 Score = 111 bits (122), Expect = 2e-18 Identities = 180/253 (71%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| ||| || || || ||| |||||| ||||| |||||||| | | Sbjct 8527 TGACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCA 8468 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 || || ||||| | ||| |||||||| || ||| ||| ||| || Sbjct 8467 AGGAAATGTTTTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAA 8408 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||| || ||| ||||| |||||||| ||||||||||| || ||| || | |||||| Sbjct 8407 GAGCAAC-CAAT-AGGCGATCGGCGACAAATTCAATGTATTGCTTCATTAGTGTGGCGTT 8350 Query 794069 CATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 |||||| | ||| || ||| ||||| | |||| | | |||||||| ||| || | || | Sbjct 8349 CATGCCTAGGAGAGCACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAG 8291 Query 794128 CCTCGATGATGAT 794140 | ||| |||| || Sbjct 8290 CGTCGGTGATAAT 8278 >seq15 Length=125974 Score = 111 bits (122), Expect = 2e-18 Identities = 181/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| ||| || || || ||| |||||||||||| |||||||| | | Sbjct 18893 ACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAAAAGTTTGTCTTGCCACCCAAG 18952 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012 || || |||||| | ||| |||||||| || ||| ||| ||| || || Sbjct 18953 GAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGT 19012 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072 | | | || || |||||||| |||||||| || || ||| || | |||||||||| Sbjct 19013 GCAACCAATAGACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATG 19072 Query 794073 CCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || | ||| || ||| ||||| | |||| | | |||||||| ||| || | || || || Sbjct 19073 CCTAGGAGAGCACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTC 19131 Query 794132 GATGATGATCTGCCTGG 794148 | ||||||| | ||||| Sbjct 19132 GGTGATGATAT-CCTGG 19147 >seq248 Length=42843 Score = 107 bits (118), Expect = 3e-17 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || || | || |||| ||| |||||||| |||||||| | | |||||| Sbjct 24032 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTT 24091 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||||||||| || | ||| | ||| | ||| || | ||| || || Sbjct 24092 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAA 24151 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| || || ||| ||||||||| | || || | || || || |||||||| || Sbjct 24152 GCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 24211 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 || || |||| |||||||||| | || || || || || Sbjct 24212 GTCAATGCTGTCGTCCTTCATGTCAACTAGGAAACAGGAAGA 24253 >seq14377 Length=266 Score = 105 bits (116), Expect = 1e-16 Identities = 174/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| ||| || || || ||| |||||| ||||| |||||||| | | Sbjct 243 TGACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCA 184 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 || || ||||| | ||| |||||||| || ||| ||| ||| || Sbjct 183 AGGAAATGTTTTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAA 124 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||| || ||| ||||| |||||||| ||||||||||| || ||| || | |||||| Sbjct 123 GAGCAAC-CAAT-AGGCGATCGGCGACAAATTCAATGTATTGCTTCATTAGTGTGGCGTT 66 Query 794069 CATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 |||||| | ||| || ||| ||||| | |||| | | |||||||| ||| || | || | Sbjct 65 CATGCCTAGGAGAGCACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAG 7 Query 794128 CCTCG 794132 | ||| Sbjct 6 CGTCG 2 >seq394 Length=33860 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||||||||| || || || ||| | || ||||| || ||| Sbjct 20790 GTACTTGGTCACGGCCTTGGTACCCTCAGACACTGCATGCTTTGCAAGTTCACCAGGCAA 20731 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 ||||| ||| || | ||||||||| ||||| | | |||||| Sbjct 20730 GATCAAGCGAACAGAGGTCTGGATTTCGCGAGAGGAAATCGTG 20688 >seq261 Length=42009 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || |||||||||||||| || ||||| ||| | || ||||| || ||| Sbjct 20629 GTACTTGGTCACAGCCTTGGTACCCTCAGACACGGCATGCTTTGCAAGTTCTCCAGGCAA 20688 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 ||||| ||| || | ||||||||| ||||| | | |||||| Sbjct 20689 GATCAAGCGAACAGAGGTCTGGATTTCGCGAGAGGAAATCGTG 20731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913788934891778