Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1283 123 2e-23 seq633 123 2e-23 seq13 122 6e-23 seq86 111 1e-19 seq39 109 4e-19 seq864 105 4e-18 >seq1283 Length=10397 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||||||||||||||| ||||| ||||| | | |||| |||| Sbjct 2750 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGGCCATC 2691 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| |||||||||||||| | || | ||||||||||| Sbjct 2690 CTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 2631 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||| || |||| ||| || || Sbjct 2630 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 2571 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||||||||| || || || |||||||| Sbjct 2570 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 2538 >seq633 Length=24846 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| || | ||||||||||||||| ||||| ||||| ||| |||| |||| Sbjct 19937 CAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 19996 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| |||||||||||||| | || | ||||||||||| Sbjct 19997 CTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 20056 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||| || |||| ||| || || Sbjct 20057 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 20116 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||||||||| || || || |||||||| Sbjct 20117 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 20149 >seq13 Length=129688 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| ||||| | || |||| | || Sbjct 71496 AGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCGTCC 71555 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| ||||||||||| || |||||||| | || | |||||||| || Sbjct 71556 TCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCC 71615 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | ||| | |||||| || | || |||||| Sbjct 71616 TGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTC 71675 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || ||||||||||| || ||||| |||||||| Sbjct 71676 TTGCCGGTGAGGGTCTTGACGAAGATTTGCATGAT 71710 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 || || |||||||| ||||||||||| || |||| | || ||||| ||||||||| Sbjct 70754 GTACTTTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 70813 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || || || |||||||||||||| | || | |||||||| || | || || |||| Sbjct 70814 GCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTG 70873 Query 34901 ACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 || | | || | ||| | ||||| || | ||| || |||||||| || | |||| Sbjct 70874 ACAGTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTC 70933 Query 34961 TTTACAAAGATCTGCAT 34977 || ||||| || ||||| Sbjct 70934 TTGACAAAAATTTGCAT 70950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||| || || ||||| | ||| | || |||| Sbjct 71195 AGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCT 71254 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || |||||||||| ||| ||||| || | || | || ||||| || Sbjct 71255 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCC 71314 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || | ||||| || || |||||| || | ||| || Sbjct 71315 TGAATCTTCGATTTGAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 71370 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAA 34967 ||||||||| || | ||||| |||| Sbjct 71371 GGTCTTTCCAGTCAAAGTCTTGACAA 71396 >seq86 Length=67758 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| | || | || || || ||||| || ||||| | Sbjct 45593 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAA 45534 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| |||||||| | || | ||||||||||| | ||||| ||||| Sbjct 45533 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGT 45474 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 45473 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 45414 Query 34968 A 34968 | Sbjct 45413 A 45413 >seq39 Length=88371 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||||||||| || || || || |||| | || Sbjct 31308 AGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCC 31367 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||| || || |||||||| | || | || |||||||| Sbjct 31368 TCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 31427 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | ||| | |||||| || | || |||||| Sbjct 31428 TGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTC 31487 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| || ||||| |||||| Sbjct 31488 TTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 31520 Score = 105 bits (116), Expect = 4e-18 Identities = 155/216 (72%), Gaps = 9/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| |||||||| || || ||||| || ||| | || |||| Sbjct 31007 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCT 31066 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||| |||| ||| ||||| || | || | |||||||| || Sbjct 31067 TCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 31126 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || |||||| |||| ||| || Sbjct 31127 TGAATCTTCGACTTGAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 31182 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || | ||||| |||| || ||||| Sbjct 31183 GGTCTTTCCGGTCAAAGTCTTGACAACTAT-TGCAT 31217 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 ||||| |||||||| ||||| ||||| || |||| | || ||||| ||||||||| Sbjct 30566 GTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 30625 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || || || |||||||||||||| | || | |||||||| || | || || |||| Sbjct 30626 GCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTGGATTTG 30685 Query 34901 ACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAG 34956 || || | ||||| ||| | ||||| || | ||| || |||||||| || | Sbjct 30686 AC--AT--TGTCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAA 30741 Query 34957 GGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| || ||||| Sbjct 30742 GGTCTTGACAAAAATTTGCAT 30762 >seq864 Length=18104 Score = 105 bits (116), Expect = 4e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| | || | || || || ||||| || ||||||| Sbjct 8494 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 8435 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| ||||| || | || | ||||||||||| | ||||| ||||| Sbjct 8434 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 8375 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| || ||||| || | Sbjct 8374 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 8315 Query 34968 A 34968 | Sbjct 8314 A 8314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325601099360138