Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq39 87.8 3e-12 >seq39 Length=88371 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || || || || ||||| | || || ||| | Sbjct 30989 TGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCGG 30930 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | |||||||| ||| || ||| ||| ||||||||||| || || || | Sbjct 30929 ATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAGC 30870 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||||| ||||| ||||| || | || ||| |||| || | || || |||| Sbjct 30869 AGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAATA 30810 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || || || ||| | |||||||| Sbjct 30809 TTCAGAAGGAGTCTACTCTGCATTTAGT 30782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785939374797840