Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq867 136 3e-26 seq1026 87.8 1e-11 >seq867 Length=18020 Score = 136 bits (150), Expect = 3e-26 Identities = 450/694 (65%), Gaps = 13/694 (2%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| |||||| ||||| | ||||||||||| || | |||||| || |||||||| Sbjct 11561 TTTTCAACGGCAGAGACATTCATGATACCATTGGCGTCGAGATCAAAGGTAACTTCAATC 11620 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | |||| || || || || | | ||| | |||| || Sbjct 11621 TGAGGAACACCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCATCAGGTTG 11680 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || ||| | ||| || ||||| || | ||||| || ||| || || Sbjct 11681 TTGTCCTTGGTGCGCTGTCGCTCGCCCTCAAAGACCTGGATGAGCACCCCAGGCTGGTTG 11740 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || ||| | || | || ||| ||| || || ||||| |||||||| | |||| Sbjct 11741 TCAGAAAAGGTCGAGAAAACTTCGGACTTCTTGGTTGGAATGGTTGTGTTACGGGGAATA 11800 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | || ||||| || ||||| || || || | ||| ||||| | ||||| ||| |||| Sbjct 11801 AGCTTCGTCATCATTCCACCGGCGGTCTCGATACCCAGAGACAAAGGAGCGACGTCAAGC 11860 Query 281717 AGGACAATATTTTG-AAGT----TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAA 281771 | |||| |||| | ||| || | ||| | |||| || ||||| || || | Sbjct 11861 A--ACAAGATTTCGTTAGTAGACTTGGAAGAAGTGTCACCAGACAGGATAGCAGCCTGGA 11918 Query 281772 TAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCAT 281831 ||| ||||| || |||||||| |||||||| || | || | || | | ||| || | Sbjct 11919 CAGCGGCACCGTACGCAACAGCCTCATCAGGGTTGATAGACTTGTTGGGCTCTTTGCCGT 11978 Query 281832 TGAAAAAATTTGAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTA 281888 |||| | | || | |||| ||| ||| ||||| || | || || ||||| | Sbjct 11979 TGAAGTAGTCGGAGATGAGTT-TCTGGATAC--GGGGAATTCGGGTGGAACCACCAACCA 12035 Query 281889 ATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGG 281948 | ||||| ||||| || || ||||| || | || | || | ||| || || | Sbjct 12036 AGACAATCTCATGAACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACAG 12095 Query 281949 GTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAG 282008 | | | | || || | || ||||| |||||||| || | |||| || Sbjct 12096 GCTGGATGGTGGATCGGAAAAGATCCTGGCAAAGCTCTTCGAAACGGGCCCGGGTAATAG 12155 Query 282009 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068 | | |||| || || ||||| | || |||| ||||||||||| |||| | || Sbjct 12156 GGGTGTAGAAATCGATACCCTCGAATAGGGAGTCAATCTCAATCGTAGTCTGAGCTGCAG 12215 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGT 282102 |||| || | || || |||||||| || || || Sbjct 12216 AAGAGAGGGTGCGCTTGGCACGTTCGCAAGCAGT 12249 >seq1026 Length=14805 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 |||| || |||||||| || | |||| ||| |||||||||||||||||||| | || Sbjct 11828 TTGAAGGGCAAAGAAGGCCGACTGCGAGGCAATCTGATGGGAAAGCGTGTCGATTTTTCG 11887 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTC 432401 || ||||||||||||||| |||| | || | | ||| | ||||| || || || | | Sbjct 11888 GCCCGTACAGTTATTACTGGTGATGCCAACCTATCACTCCACGAAGTCGGCGTCCCACGC 11947 Query 432402 ATTATTGC 432409 | ||| || Sbjct 11948 AGTATCGC 11955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739496189429052