Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq248 109 1e-18 >seq248 Length=42843 Score = 109 bits (120), Expect = 1e-18 Identities = 211/308 (69%), Gaps = 5/308 (2%) Strand=Plus/Minus Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGA 110745 |||| ||| | | ||||||||| ||||||| | ||| || | || || || |||| Sbjct 24081 TTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGCAATAAGC 24022 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 || ||| ||||||||||||| ||||| |||||||| |||| | ||||| || | | Sbjct 24021 GACCTGGTGCATTTGCTATCTACCTCGAGCCTTGGCACGCAGACGTGTTTGACTTTCTTG 23962 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | || || || || || |||||| | | || || || | || ||| ||| Sbjct 23961 ATTTGCGAAAGAACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTCTTCCTTGCTCTGT 23902 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 |||| ||||| | |||||||| || || || | || || ||| | || ||||||| Sbjct 23901 GGATCCCAGATCTTTTCATGAAGCGCGTCGAAAAGAACGGGGATTGGACCCTCATGTGTC 23842 Query 110926 CTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 | || || | ||||| || ||||| ||||| | |||||||| | || ||||| Sbjct 23841 C-CAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCGAGGAGTTTGAGGCTCTCTACGAG 23783 Query 110985 AAATATGA 110992 || ||||| Sbjct 23782 AAGTATGA 23775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186461510087022