Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq39 96.9 2e-15 >seq39 Length=88371 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | ||| | ||| | |||||| || || || |||||||| ||| Sbjct 30535 ACCACCTCGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCT 30594 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| |||| || |||||||||||||| | || ||||| || | || Sbjct 30595 CAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGG 30654 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || ||| || | || |||| ||| | ||| || ||||| | Sbjct 30655 GATACCCTCCTTATCCTGAATCTT-GGATTTGACATTGTCGATGGTATCAGAAGATTCGA 30713 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || || || ||||| || |||||| Sbjct 30714 CTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 30763 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/204 (71%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || ||||| |||||||| || || | || |||| || || || || ||| Sbjct 31028 TCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAA 31087 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| ||||||||||| | || | ||| || || || ||| ||| | | |||| Sbjct 31088 ATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGAATCTTC-GACTTGACATT 31146 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||||| || || || |||| ||||| || || || || || || || || Sbjct 31147 GTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 31206 Query 33738 AAAGATCTGCAT--AGTTGGTGTG 33759 || || ||||| |||| ||||| Sbjct 31207 AACTAT-TGCATAGAGTTAGTGTG 31229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328611451539840