Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13 109 1e-18 seq39 100 7e-16 >seq13 Length=129688 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| |||||||| ||| ||| || Sbjct 71175 CAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCGGAT 71116 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| |||||| ||||||||||| || ||||| ||| || ||| || Sbjct 71115 ACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAG 71056 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||| || || |||||| | || ||||| | |||||| |||| ||||| | Sbjct 71055 CGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAATATT 70996 Query 206353 CAGAAAGAGTCTACT 206367 ||||| ||||||||| Sbjct 70995 CAGAAGGAGTCTACT 70981 Score = 96.9 bits (106), Expect = 8e-15 Identities = 132/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || ||||| || ||||| |||||||| ||| |||||| || | Sbjct 70942 TTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCTGATACCAT 70883 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| | || || |||||||| || || || ||||| || ||| ||| |||| Sbjct 70882 CGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAGCAACGACT 70823 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || |||||||||||| ||||||| || | || || ||| || ||| ||||||| Sbjct 70822 TATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTATAACATCCAGAA 70763 Query 206358 AGA 206360 || Sbjct 70762 GGA 70760 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || ||||| ||| || || || || | |||||||| || ||| Sbjct 71322 AAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGATCTTCGCTGGTAAG 71263 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || | ||||| ||||| ||||||| || || ||||||||| Sbjct 71262 CAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGAAGGAATCCACTCTTCAC 71203 Query 206374 CTTGT 206378 ||||| Sbjct 71202 CTTGT 71198 >seq39 Length=88371 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || || || |||||||| ||| || || Sbjct 30987 CAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCGGAT 30928 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| || ||||| ||| || ||| || Sbjct 30927 ACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAGCAG 30868 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||| || || |||||| | || ||||| | |||||| |||| ||||| | Sbjct 30867 CGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAATATT 30808 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||||||||| || Sbjct 30807 CAGAAGGAGTCTACTCTGCA 30788 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || ||||| || || || |||||||| ||| |||||| || | Sbjct 30754 TTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCTGATACCAT 30695 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || || |||||||| || || || || || || ||| ||| |||| Sbjct 30694 CGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAGCAACGACT 30635 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || |||||||||||| ||||||| || | || || ||| |||||| ||||||| Sbjct 30634 TATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAACATCCAGAA 30575 Query 206358 AGA 206360 || Sbjct 30574 GGA 30572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181470987690942