Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq428 84.2 3e-11 >seq428 Length=32488 Score = 84.2 bits (92), Expect = 3e-11 Identities = 181/270 (67%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 147127 TGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGC 147186 ||||| ||||||| ||||||| | | || ||| | |||||| || | | | | Sbjct 12292 TGGCAGGGCGGCAACGCCATGAGGTGTAGATCCCGTGCGTTCCACGCACTCATGATGATC 12351 Query 147187 CGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTC----AGCTGGTCCAC 147242 |||||| | || || |||| |||| || || ||| || |||||||| || Sbjct 12352 CGCCTGTCGTACGGCTTGTTCTTGATCTTGTCAAT----CACGTCGGCAAGCTGGTCGAC 12407 Query 147243 GCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTG 147302 |||| ||| ||||| |||| | || |||||| || |||||||||| ||| || Sbjct 12408 TCCCTTGCCGGTGTAGTCTGTCTTGGCATCGACGTACTCTGCGCCAAAGTGCCGCCATTG 12467 Query 147303 GAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAG 147362 |||||||||||| || ||||| ||||| | | ||| | || ||| | ||| Sbjct 12468 GAAGCCGTACACGGGTCCCAGATCGCCTACTTCACGGTGTGTGAGACCCAGATTGTCGAG 12527 Query 147363 AAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 |||||| |||| || | | ||||||| || Sbjct 12528 GAACTCGCGGGATCCATTGCCGTCCCATAT 12557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583319503252800