Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq258 113 6e-19 seq248 111 2e-18 seq15 87.8 3e-11 seq14377 86.0 9e-11 seq539 86.0 9e-11 >seq258 Length=42171 Score = 113 bits (124), Expect = 6e-19 Identities = 265/394 (67%), Gaps = 17/394 (4%) Strand=Plus/Plus Query 259793 GTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGAC 259852 |||||||| |||||| | ||| | ||||| || ||| | || ||| |||| || Sbjct 14113 GTCGAGCGACCCCAGCACATGATTATGCGCGTTGCCGTCGGT-ATT-TGGG------GA- 14163 Query 259853 GTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTT 259911 |||||| | |||| ||| | | |||||| | |||||| ||||| | | || Sbjct 14164 ---GACAATA---TTGAGCGCGTTTTGGAGACCTACCACCTCATGTC-CAGCAAGCTCTT 14216 Query 259912 CACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTG 259971 |||| || | || || ||||| || || || || || | ||| || || || Sbjct 14217 CACCCACGCCTCACCTACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTG 14276 Query 259972 CTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTG 260031 || || | |||||||||| ||| || || || ||||| ||||| |||||| ||| Sbjct 14277 TTTCCTAGTCGACATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACGTG 14336 Query 260032 CGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGC 260091 || | ||||||||| ||| || || ||||| || || ||| | || || | Sbjct 14337 TGCCATGATCTCCAAGATGGCTGGTGGAATCGGCTTGAACGTCCACCGCATCCGTGCTAC 14396 Query 260092 GGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGT 260151 ||| | ||| | || ||||||||||| ||||||||| | | |||||||| ||||| Sbjct 14397 CGGCTCTTACATTGCCGGCACCAACGGTACATCCAACGGCATCATTCCCATGCTCCGCGT 14456 Query 260152 TTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || ||| |||| || | ||||| |||||| || Sbjct 14457 CTTCAACAACACTGCCAGATACGTTGACCAGGGC 14490 >seq248 Length=42843 Score = 111 bits (122), Expect = 2e-18 Identities = 202/293 (69%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| ||||| | | |||||| || | || || ||||| || || || || || | Sbjct 24323 CATGTC-CAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAACGCTGGTACCCCCC 24265 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 ||| || || || || || | |||||||||| ||| || || || |||| Sbjct 24264 AATGTCAGCTGTCTTCCTGTTTCCTAGTTGACATGAAGGACGACAGCATTGACGGTATCT 24205 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | ||||| |||||| || || | ||||||||| ||| || || ||||| || || Sbjct 24204 ACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAACG 24145 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 ||| | || ||| | ||| | ||| | || ||||||||||| ||||||||| Sbjct 24144 TCCACCGCATCCGTGCCACCGGCTCTTACATTGCCGGCACCAACGGTACATCCAACGGCA 24085 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | | |||||||||||||| || ||| |||| || | ||||| |||||| || Sbjct 24084 TCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTGACCAGGGC 24032 >seq15 Length=125974 Score = 87.8 bits (96), Expect = 3e-11 Identities = 153/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| || || | || ||| |||||||| | | |||| | |||||| || Sbjct 19140 ATCATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCT 19081 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| | ||||||||||||| | || ||| || || |||||| ||||||||||| || | Sbjct 19080 CTCCTAGGCATGAACGCCA-CACTAATGAAGCAATATATTGAA-TTTGTCGCCGATCGTC 19023 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | | | || || || | || ||| ||| || |||||||| ||| | ||| Sbjct 19022 TATTGGTTGCACTTGG-TAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATG 18964 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| || || | | |||||||| |||||||||||| Sbjct 18963 GAGAACATTTCCTTGGGTGGCAAGACAAACTTTTTCGAG 18925 >seq14377 Length=266 Score = 86.0 bits (94), Expect = 9e-11 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 1456531 CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGG 1456590 ||| || || | || ||| |||||||| | | |||| | |||||| || ||| | || Sbjct 2 CGACGCTGTTGGCATTGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGG 61 Query 1456591 CATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCG 1456650 ||||||||||| | || ||| || ||||||||| ||||||||||| ||||| | | Sbjct 62 CATGAACGCCA-CACTAATGAAGCAATACATTGAA-TTTGTCGCCGATCGCCTATTGGTT 119 Query 1456651 GCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGAT 1456710 || || || | || ||| ||| || |||||||| ||| | ||||| || Sbjct 120 GCTCTTGG-TAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAAAACAT 178 Query 1456711 CTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCCAAGGCCGG 1456769 || | | |||||||| ||||| |||||| || | ||| || || ||||| || Sbjct 179 TTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAAAAGGCTGG 238 Query 1456770 CGTCA 1456774 ||||| Sbjct 239 CGTCA 243 >seq539 Length=27760 Score = 86.0 bits (94), Expect = 9e-11 Identities = 174/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || ||| ||| || || | || ||| |||||||| | | |||| | |||||| || Sbjct 8278 ATTATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCT 8337 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| | ||||||||||||| | || ||| || ||||||||| ||||||||||| |||| Sbjct 8338 CTCCTAGGCATGAACGCCA-CACTAATGAAGCAATACATTGAA-TTTGTCGCCGATCGCC 8395 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | | | || || || | || ||| ||| || |||||||| ||| | ||| Sbjct 8396 TATTGGTTGCTCTTGG-TAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATG 8454 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 || || || | | |||||||| ||||| |||||| || | ||| || || Sbjct 8455 GAAAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAA 8514 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| ||||||| Sbjct 8515 AAGGCTGGCGTCA 8527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175582969638524