Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq13 140 3e-28 seq39 131 2e-25 seq1283 113 5e-20 seq864 113 5e-20 seq633 107 2e-18 seq86 107 2e-18 >seq13 Length=129688 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | |||||||| || || || ||||| || ||||||||||| || Sbjct 71481 CCACCTCGGAGGCGGAGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 71540 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || || || |||| ||||||||| ||||| || Sbjct 71541 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGG 71600 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | || || ||||| || || Sbjct 71601 ATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACC 71660 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||||||||| || ||||| | || || ||||| |||||||| Sbjct 71661 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 71707 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || ||||||||||| || || ||||||||| | Sbjct 71180 CCACCACGGAGGCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCG 71239 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || || || ||||| ||||||||||| || || Sbjct 71240 AGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGA 71299 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || |||||| ||| | |||||||| || || || Sbjct 71300 ATACCTTCCTTATCCTGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACC 71359 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 ||||| || ||||| || || || ||||| || || Sbjct 71360 TCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGAC 71394 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 134522 TTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581 |||||| || ||||| ||||||| | ||| | ||| || ||||| || || ||||| Sbjct 70759 TTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAA 70818 Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 ||| | || ||||| ||||| || || || || || || ||||| || |||||| | Sbjct 70819 AATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTGACAGT 70878 Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 ||| | || || || ||||| || || | || || || || || || || || || || Sbjct 70879 GTCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGAC 70938 Query 134702 GAAAATTTGCAT 134713 ||||||||||| Sbjct 70939 AAAAATTTGCAT 70950 >seq39 Length=88371 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | |||||||| || || || ||||| ||||||||||| || | Sbjct 31293 CCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAA 31352 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || || || || | ||||||||| || || || Sbjct 31353 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGG 31412 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || ||||| ||| | || || ||||| || || Sbjct 31413 ATTCCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACC 31472 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||||||||| || ||||| | || || ||||| |||||||| Sbjct 31473 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 31519 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || ||||||||||| || || ||||||||| Sbjct 30992 CCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAG 31051 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| || || || |||||||| ||||||||||| || || Sbjct 31052 AGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGG 31111 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 31112 ATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 31171 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 || || || ||||| || ||||| ||||| || || Sbjct 31172 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 31206 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | |||||| || | ||| |||||| || ||||||||||||| Sbjct 30536 CCACCTCGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTC 30595 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || |||||||| | || ||||| || || || Sbjct 30596 AGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGG 30655 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || |||||| ||| | || || || ||||| || Sbjct 30656 ATACCCTCCTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACT 30715 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || || || || || ||||||||||| Sbjct 30716 TCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 30762 >seq1283 Length=10397 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||| ||||| || ||||||||||||| | |||| | Sbjct 2755 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGG 2696 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || ||||| || | || ||||| || || || ||||| || Sbjct 2695 CCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCC 2636 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| || || || Sbjct 2635 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 2576 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | ||||| |||||||| ||||| ||| Sbjct 2575 ATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTG 2534 >seq864 Length=18104 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| ||||||||||||||| | ||| || ||| || ||||| ||||| || || | Sbjct 8494 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 8435 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| ||||||||||| || || ||||| || || ||||| ||||| ||||| || Sbjct 8434 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 8375 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || || || || ||||| || || || | ||| || |||| Sbjct 8374 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 8315 Query 134704 AA 134705 || Sbjct 8314 AA 8313 >seq633 Length=24846 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | || || ||| ||||| || ||||||||||||| | |||| | Sbjct 19932 AGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGG 19991 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || ||||| || | || ||||| || || || ||||| || Sbjct 19992 CCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCC 20051 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| || || || Sbjct 20052 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 20111 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | ||||| |||||||| ||||| ||| Sbjct 20112 ATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTG 20153 >seq86 Length=67758 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| ||||||||||||||| | ||| || ||| || ||||| ||||| || |||| Sbjct 45593 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAA 45534 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| || || || ||||| || || ||||| ||||| ||||| || Sbjct 45533 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGT 45474 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || || || || ||||| || || || | || || |||| Sbjct 45473 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 45414 Query 134704 AA 134705 || Sbjct 45413 AA 45412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505252453577040