Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq258 210 3e-49 seq248 205 1e-47 seq15 105 9e-18 >seq258 Length=42171 Score = 210 bits (232), Expect = 3e-49 Identities = 1087/1720 (63%), Gaps = 52/1720 (3%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| |||| || || | || |||||| || || ||||| || | | Sbjct 15530 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 15471 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || ||||||||||| | || ||||| || ||||| || || | || || Sbjct 15470 TCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAG 15411 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | || ||| || |||| | || || |||| | ||| ||||| | ||||| Sbjct 15410 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAGAA 15351 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || |||||||| | ||| |||| ||||| || | || || || || | Sbjct 15350 GGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAG 15291 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 || || || |||| || || || || ||| | || | ||| ||| || Sbjct 15290 GTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAG 15231 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 || || ||||| |||| ||| ||||| || | || || || ||||| || | Sbjct 15230 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGC 15171 Query 69079 AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 | | || ||| || || || | |||||||| |||| |||||| |||| ||||| | | Sbjct 15170 AGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATG 15111 Query 69139 TTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 || | || | ||| || ||| || |||| || | ||| || || || || || || Sbjct 15110 TT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTT 15052 Query 69198 TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATA-- 69255 ||||| || |||| | || || | || || | || || | || || ||| | Sbjct 15051 ACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTA 14992 Query 69256 ----ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATT 69311 || || | ||| || | ||| || | || ||||| || ||||||| | Sbjct 14991 GTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCGGGG-- 14934 Query 69312 TGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 ||| || | || ||||| || || || || | || || ||||| || | Sbjct 14933 -GCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTT 14875 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || |||||| |||| ||||| |||||||| || ||||| || | || ||||| | Sbjct 14874 CTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGT 14815 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTA---ACG 69485 ||| || |||| || || | ||| | | ||| || |||||| ||| Sbjct 14814 CTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA---GTCTTGCGGCCACG 14758 Query 69486 CTTCTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCC 69543 ||| ||||| | | ||| | |||| || ||||| || || | |||| || Sbjct 14757 GCCCTCACGCTCATACTTTTCGTAGAGAGCC--TCAAATTCCTCGCCATAGCAATCAGCC 14700 Query 69544 AATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA---ACTCGT 69600 | ||||| || || || |||||||| | | ||| ||| | | ||| || || Sbjct 14699 AGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCGTTCTTTTCGACGCGC 14643 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 ||||| || ||||| || ||||| ||||| | ||||| || | | | ||||||||| Sbjct 14642 TTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCC 14583 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || || ||| | ||| ||||| || | | || | ||||| || || || Sbjct 14582 TTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGG 14523 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || ||||| || || || ||||| || | ||||||||||||||| Sbjct 14522 TAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTG 14463 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || |||| | ||||| ||||| || || || ||| |||| || || || | ||| ||| Sbjct 14462 TTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAA 14403 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || | || || || | | || ||||| || ||||| || ||||| Sbjct 14402 GAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATC 14343 Query 69901 AGAGCACAACGT-TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAG 69959 | |||| |||| || | ||||| || ||||| || ||||| || || |||||| | Sbjct 14342 ATGGCAC-ACGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGAC 14284 Query 69960 AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGC 70019 || |||||| ||||| ||| || || || || || || | |||||| || || Sbjct 14283 TAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGC 14224 Query 70020 GTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATAT---- 70075 ||| ||||| || || | || | ||| || || | | | || |||| Sbjct 14223 GTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTC 14164 Query 70076 --CCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGT 70133 |||| ||| || | || || ||||| | ||| ||||| ||||| || || | Sbjct 14163 TCCCCA------AATACCGACGGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAAT 14110 Query 70134 TTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA 70193 || || | ||| | || |||||| | |||||||| || || ||||| || | || Sbjct 14109 CTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATA 14050 Query 70194 TGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTAT 70253 |||||||| ||||| | |||| | || | || | ||||| | ||| | || Sbjct 14049 GTTGAAGTCTCTGTCGTAGACAATAGCGGAGTCAAGCTCCTCCTTGTGTTTCATGACGCA 13990 Query 70254 ATC-CATAACAGTAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACAT 70309 || || | || ||||| || || || || | |||| || || || |||| Sbjct 13989 CTCGTATGTCTGT-TTCGAGATCATTGGCGAGGCACGCT---CATTCTTGGGGTTGACAT 13934 Query 70310 AGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTG 70369 ||| | | | ||| | ||| | | | ||||| || | |||||| || || | Sbjct 13933 AGTGGTAGAGATCGCTGACAACAGCCGACCACTGCTTTTTAGTCTGCTTGTGCAAGTTGG 13874 Query 70370 ATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 | | ||| || | ||| || ||||||||||| || ||||| Sbjct 13873 AAACGGCGATACGGGCCGCAAGAATAGCATAATCGGGATG 13834 >seq248 Length=42843 Score = 205 bits (226), Expect = 1e-47 Identities = 912/1431 (64%), Gaps = 50/1431 (3%) Strand=Plus/Plus Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||| ||| ||||| || |||||||| | ||| ||||| || | || || || ||| Sbjct 23280 GCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCG 23339 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || | | | || ||| || || || | |||||||| |||| |||||| ||| Sbjct 23340 AAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGT 23399 Query 69127 CTATGTCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAAT 69185 | ||||| | | || | || | ||| || ||| || |||| || | ||| || || Sbjct 23400 CGATGTCGCATGTT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGAT 23458 Query 69186 TTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCG 69245 || || || || ||||| || |||| | ||| || | || || | || || | || Sbjct 23459 CTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCG 23518 Query 69246 TCCATCTATA------ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTAC 69299 || ||| | || || | ||| || | ||| || | || ||||| || || Sbjct 23519 GCCTTCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAAC 23578 Query 69300 CTCATTAGAATTTGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGT 69356 ||||| || ||| || | || ||||| || || |||||| | || || Sbjct 23579 CTCATCAGGG---GCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGT 23635 Query 69357 CCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGT 69416 |||||||||| ||| || ||||| |||| ||||| || ||||| || ||||| || | Sbjct 23636 TCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTT 23695 Query 69417 ACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGT 69476 || ||||| |||| | |||| || || | ||| | | ||| || || Sbjct 23696 GCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA---GT 23752 Query 69477 CTTGTA---ACGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCC 69531 |||| ||| ||| ||||| || | ||| | |||| || || || || || Sbjct 23753 CTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCA 23810 Query 69532 CAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCC 69591 | |||| ||| ||||| || || || |||||||| | | ||| ||| | | | Sbjct 23811 TAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCGTTC 23867 Query 69592 TTA---ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTT 69648 || || || ||||| || ||||| || ||||| ||||| | ||||| || | | Sbjct 23868 TTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCA 23927 Query 69649 CTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGC 69708 | |||||||| || || || ||| | ||| ||||| || | | || | ||| Sbjct 23928 CGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGC 23987 Query 69709 CATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTAT 69768 || || || || || || || | | || ||||| ||||| || ||||| || | |||| Sbjct 23988 CAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTAT 24047 Query 69769 CTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTT 69828 ||||||||||| || |||| | ||||| ||||| || || || ||| |||| || || Sbjct 24048 CTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTG 24107 Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 || | ||| ||| || | || || || | | || || || || ||| Sbjct 24108 CCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCC 24167 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 || || ||||| | ||||| || | ||||| || ||||| || ||||| || || Sbjct 24168 ATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCC 24227 Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAAT 70008 |||||| || || |||||| ||||| ||| || || || || || || | | Sbjct 24228 TTCATGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGT 24287 Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 ||||| || ||||| ||||| || || | || | ||| || || | | | | Sbjct 24288 GTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGT 24347 Query 70069 TCTATAT------CCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGT 70122 || || | |||| ||| || | ||| || ||||| | ||| ||||||||| Sbjct 24348 TCGATGTTGTCTCCCCA------AATACCGACCGCAACGCGCATAATCATGTGCTGAGGT 24401 Query 70123 CGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCA 70182 || || || | || || | ||| | || |||||| | |||||||| || || ||| Sbjct 24402 CGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCA 24461 Query 70183 AAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATAT 70242 || || | || |||||||| ||||| | || | || | || | ||||| | | Sbjct 24462 AAGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGCGGAGTCAAGCTCCTCCTTGTGT 24521 Query 70243 TTGGTAACTATATC-CATAACAGTAGGTGAGATAATCGGAGA---TCGTTTACCATTTTT 70298 || | || || || | || ||||| || || || || | |||| || Sbjct 24522 TTCATGACGCACTCGTATGTCTGT-TTCGAGATCATTGGCGAGGCACGCT---CATTCTT 24577 Query 70299 AGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTT 70358 || || ||||||| | ||| ||| | ||| | | | ||||| || | ||| Sbjct 24578 GGGGTTGACATAGTGGTATAGATCGCTGACAACAGCCGACCACTGCTTTTTAGTCTGCTT 24637 Query 70359 GTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 ||| || || || | ||| || | ||| || ||||||||||| || ||||| Sbjct 24638 GTGCAAGTTGGAAACGGCGATACGGGCCGCAAGAATAGCATAATCGGGATG 24688 >seq15 Length=125974 Score = 105 bits (116), Expect = 9e-18 Identities = 301/458 (66%), Gaps = 16/458 (3%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || ||||| ||||| ||||| || ||||||||||| || || ||||| | Sbjct 18889 CATAACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAAAAGTTTGTCTTGCCACC 18948 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAA 39429 ||| || || || ||||||||||| || || || | | || ||| |||| ||| Sbjct 18949 CAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTA-- 19006 Query 39430 TCCTAATTCTGAAATCAAT---CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTC 39486 || | || || |||| | ||| || |||||||| || ||| ||||| | | Sbjct 19007 -CCAA---GTGCAACCAATAGACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGT 19062 Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546 ||||| |||| ||| | || |||||||| || | |||||||| || ||| | Sbjct 19063 GGCGTTCATGCCTAGGAGAGCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCC 19122 Query 39547 TACGGCCTCTGTTAT--TATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGT 39604 || || || || || |||| | || | | | || | | | ||| | ||| Sbjct 19123 AACAGCGTCGGTGATGATATCCTGGATA--ATTTGCTTGCTGGCTCGGTGCTTAAGATGC 19180 Query 39605 TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTA 39664 || | || || || || || | |||||||| | || | ||||||| Sbjct 19181 GAGTGCAACAGACATGCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTA 19240 Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724 || || ||||| || ||||| ||||||||||| |||||||| || || | ||||| | Sbjct 19241 GAGAAGGTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCA 19300 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAAC 39762 || ||||||||||| || || || || || || || Sbjct 19301 CCGCTGAAGAAGATGCCCTCCACAGCAGCGAAAGCCAC 19338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686710437911280