Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15 96.9 3e-15 >seq15 Length=125974 Score = 96.9 bits (106), Expect = 3e-15 Identities = 203/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||||||||| || || || | || || || ||||| || ||||| | ||| || Sbjct 19804 ATTTGGCAAATGTATAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 19745 Query 43790 ACTAAAGACTTAGCAC-ATTGGATTG--CATTAAAACCACAA-GAAAAACATTTTATATC 43845 | || ||||| |||| |||||| | | | | || | || ||| | || || || Sbjct 19744 TCCAAGGACTT-GCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTC 19686 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 ||||||| || |||||||| ||||| || ||||||||||| ||| || || Sbjct 19685 ACACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAGCG 19626 Query 43906 GTTT-GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 || ||| || ||||| | || || || || || || ||||| || || || | Sbjct 19625 TTTCAGCGGC-GAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGA 19567 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 | || |||||||| || |||| ||| ||| ||||| |||| ||||||||||| Sbjct 19566 TGGAGAATATTCACTCTGAAACATACTCTCTCCTGATCGATAGCTACATCAAAGA 19512 Score = 93.3 bits (102), Expect = 3e-14 Identities = 330/505 (65%), Gaps = 22/505 (4%) Strand=Plus/Minus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTT 44134 ||||||||||||||| || ||||| | || ||||| || | | || | Sbjct 19398 AAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGCTTCGCCCAGCGCTTG 19339 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || || || | |||||| ||||| ||||| || | |||||| | || || ||| Sbjct 19338 GTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCGTCGATTTTCTGG 19279 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| || ||| ||||||| || | || || || || || | || |||||| Sbjct 19278 CTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTGAT 19219 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGCTTGTT--ACTTGGATATCTAGGAGACGATAAGC 44312 || || || || |||||||| || |||| ||| | || | || | ||| || Sbjct 19218 GAGGGTTTGCACACAGATTTTGCATGTCTGTTGCACTCGCATCTTAAGCAC-CGA---GC 19163 Query 44313 CTTCATGTAAGACAATTA--CAG-ATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAAT 44369 | || | || |||| ||| |||| | || || || || || ||||| | Sbjct 19162 CAGCAAGCAA----ATTATCCAGGATATCATCACCGACGCTGTTGGCATTGAGCAAGAGT 19107 Query 44370 TTATGACAACAGCATTACC-TGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAA 44428 || |||| || | || ||| | | |||| ||||| | | ||||| ||| Sbjct 19106 TTTTGACCGAGGCTCTGCCGTGTGC-TCTCCTAGGCATGAACGCCACACTAATGAAGCAA 19048 Query 44429 TATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATT 44488 |||||||||| | || |||||| || | | | ||| ||| ||| || |||| Sbjct 19047 TATATTGAATTTGTCGCCGATCGTCTATTGGTTGCACTTGGTAACGAAAAGG--TATACA 18990 Query 44489 GTACAA--AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTT 44546 || ||||| || ||||| ||||| || ||||| |||| ||||| |||||||||| Sbjct 18989 AAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTTT 18930 Query 44547 TTGAAAAACGCGTTGGAGAATATCA 44571 | || || || |||||||||||||| Sbjct 18929 TCGAGAAGCGAGTTGGAGAATATCA 18905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397344094027510