Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq39 96.9 3e-15 seq258 95.1 1e-14 seq13 91.5 1e-13 seq633 86.0 5e-12 seq248 82.4 6e-11 >seq39 Length=88371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| || ||||| | ||||| || || ||||||||||||||| | Sbjct 30764 CCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 30823 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || |||||||| ||||| || | ||||| ||||| || || || || Sbjct 30824 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 30883 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||| || | | || | || || | || ||||||| Sbjct 30884 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACT 30943 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| ||||| |||| ||| || || ||||| |||||| Sbjct 30944 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 30991 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || ||||||||||||| |||| ||||||| ||||| || ||||| || Sbjct 30572 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 30631 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || || || || || || || || | |||||| ||||| |||||| ||| | | Sbjct 30632 ATAAGTCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTGGATTTGACATTG 30691 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | || || | | ||| ||||| | || |||| || || |||| || || ||| Sbjct 30692 TCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACA 30751 Query 27237 AAGATTTGCATA 27248 || ||||||||| Sbjct 30752 AAAATTTGCATA 30763 >seq258 Length=42171 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 || || |||||||||| ||| || | |||||||||| |||| | || |||||| | Sbjct 15530 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 15471 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 || ||||| || | ||||| | || | ||||||||||||| || | | | || Sbjct 15470 TCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAG 15411 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 || |||| ||||||| | |||| | ||||| | ||||| ||||||| | | Sbjct 15410 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAGAA 15351 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGA 130993 || |||||| |||||||| || ||||| || || |||| ||||||| Sbjct 15350 GGCTTGACA---TTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGA 15303 >seq13 Length=129688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| |||||||| || ||||| || || ||||||||||||||| | Sbjct 70952 CCACCCCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 71011 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || |||||||| ||||| || | ||||| ||||| || || || || Sbjct 71012 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 71071 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||| || | | || | || || | | ||| ||| Sbjct 71072 ATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACT 71131 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| ||||| |||| ||| || || ||||| |||||| Sbjct 71132 TCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 71179 >seq633 Length=24846 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/236 (68%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 27015 TTATTGCCTCCGC---GCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 || ||||| |||| ||| |||| |||||||| | || || || || || ||| Sbjct 19914 TTCTTGCCACCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTG 19973 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 |||||||||| | |||| | || |||||||| ||||| || | || || || || || Sbjct 19974 TAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGG 20033 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 ||||| || | ||||| || || ||||||| || | | | || | ||||| | Sbjct 20034 TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAA 20093 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || || || | || ||||| || ||||| || || || ||||| Sbjct 20094 GACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 20149 >seq248 Length=42843 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 || || |||||||||| ||| || | |||||||||| |||| | || |||||| | Sbjct 22992 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 23051 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 || ||||| || | ||||| | |||| |||||||||||| || | | | || Sbjct 23052 TCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 23111 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 || |||| | ||||| | |||| | |||||| | ||||| ||||| | | | Sbjct 23112 TTGCGAATATCGTGCTGCTTGATCTGCTCCTTCAAGTTGTCCCACTCCCACAACTCAGAA 23171 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGA 130993 || |||||| |||||||| || || || || | |||| ||||||| Sbjct 23172 GGCTTGACA---TTCCACATGTCGAACTGAAGAACACCTTCCGAGGCGGGA 23219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424814757329424