Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq539 104 7e-17 seq15 89.7 2e-12 >seq539 Length=27760 Score = 104 bits (114), Expect = 7e-17 Identities = 125/169 (74%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 |||||||| | |||| | || ||||| |||| || || || | || || ||||| Sbjct 8061 CAGCTTCGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGTATCTTCTTCAGCGGTGC 8120 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 |||| ||||| || |||||| | || |||||||| || |||| ||||| ||||| || Sbjct 8121 CTTT-GCCTCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTA 8179 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 ||||||| ||| || || ||||||||||| ||||| |||||||| Sbjct 8180 ACGAACTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCCTGTCT 8228 >seq15 Length=125974 Score = 89.7 bits (98), Expect = 2e-12 Identities = 122/169 (72%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 |||||||| | |||| | || ||||| |||| || || || | || || ||||| Sbjct 19357 CAGCTTCGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGC 19298 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 |||| || || || |||||| | || |||||||| || |||| ||| || ||||| || Sbjct 19297 CTTT-GCGTCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTA 19239 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 ||||||| ||| || || ||||||||||| || || || ||||| Sbjct 19238 ACGAACTTATCTCCCGTGATGAGGGTTTGCACACAGATTTTGCATGTCT 19190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587865861478390