Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq258 241 1e-58 seq248 223 4e-53 seq352 102 9e-17 seq831 89.7 6e-13 seq189 84.2 2e-11 >seq258 Length=42171 Score = 241 bits (266), Expect = 1e-58 Identities = 367/518 (71%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| || | ||| | ||| ||| || |||||| | || || || |||||| Sbjct 14185 GAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAAC 14244 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 |||||||| || |||| |||| ||| ||||| || | |||||||| ||| Sbjct 14245 GCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGACAGC 14304 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || ||||| |||||||| || |||||| ||||||| ||||||||| | | ||||| Sbjct 14305 ATTGACGGTATCTACGACACTCTCAAGACGTGTGCCATGATCTCCAAGATGGCTGGTGGA 14364 Query 53423 ATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||||| | || || | || ||||||| | |||| | || || || |||| Sbjct 14365 ATCGGCTTGAACG--TCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAACG 14422 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | || | || ||| | || ||||||||||||||||||||||| ||| | ||||| Sbjct 14423 GTACATCCAACGGCATCATTCCCATGCTCCGCGTCTTCAACAACACTGCCAGATACGTTG 14482 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| ||| ||||| || | || ||||||||||||||||| |||||||| | Sbjct 14483 ACCAGGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCACGCAG 14542 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGT 53659 || | | || ||||| || |||| ||| || ||| | ||||| | || ||| || Sbjct 14543 ACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAATCG-TGCTCGC 14601 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 ||||| || ||||||||||| || || ||||||||| | || || ||| ||| | Sbjct 14602 GACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGAACGGG 14661 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 || ||| ||| ||||| || ||||||||||| ||||| Sbjct 14662 GATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCT 14699 Score = 109 bits (120), Expect = 6e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 ||| || ||||||||| | ||| | | || | ||| || ||||| ||||| | Sbjct 15669 GACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGTGCCTT 15728 Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863 ||||||||||||||||| || ||| || |||| || ||||| | ||| |||| | | Sbjct 15729 TATCGACCAGTCCCAGTCGCTCAACGTCCACATGAAGGATCCTACTATGGGCAAGATCAC 15788 Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| ||||||||| || |||||| ||| ||||||||||| |||||||| |||| || Sbjct 15789 CTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTACTTGCGCAC 15848 >seq248 Length=42843 Score = 223 bits (246), Expect = 4e-53 Identities = 378/543 (70%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| || | ||| | ||| ||| || |||||| | || || || |||||| Sbjct 24337 GAGACTTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAAC 24278 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 |||||||| || |||| |||| ||| ||||| || | |||||||| ||| Sbjct 24277 GCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTTGACATGAAGGACGACAGC 24218 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || ||||| |||||||| || |||||| |||||| ||||||||| | | |||||| Sbjct 24217 ATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGT 24158 Query 53423 ATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||||| | || || | || ||||||| | |||| | || || || |||| Sbjct 24157 ATCGGCTTGAACG--TCCACCGCATCCGTGCCACCGGCTCTTACATTGCCGGCACCAACG 24100 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | || | || ||| | || ||||| ||||||||||||||||| ||| | ||||| Sbjct 24099 GTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTG 24040 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || ||||| || | || || |||||||||||||| |||||||| | Sbjct 24039 ACCAGGGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGAGCCTTGGCACGCAG 23980 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGT 53659 || | | || ||||| || |||| ||| || || | ||||| | || ||| || Sbjct 23979 ACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCG-TGCTCGC 23921 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 ||||| || ||||||||||| || || || |||||| | || || ||| ||| | Sbjct 23920 GACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAAGAACGGG 23861 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 || ||| ||| ||||| || ||||||||||| ||||| | | ||| || |||||| Sbjct 23860 GATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCGAGGAG 23801 Query 53780 TTT 53782 ||| Sbjct 23800 TTT 23798 Score = 109 bits (120), Expect = 6e-19 Identities = 302/452 (67%), Gaps = 21/452 (5%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| |||| | || || ||||| ||||| || || | || ||| |||| ||| Sbjct 23116 CGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAATCCTGGGTAAC 23057 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| || ||||| |||||| ||||||| |||| |||||| | | || ||||| Sbjct 23056 AATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAA 22997 Query 55604 TTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC 55660 || || | || ||| | | ||| ||||||| || | || ||| Sbjct 22996 TTC--CAGG-TCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTTTGGT-- 22942 Query 55661 CCGCAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGG 55712 | | | || |||| || || |||| |||||| ||| | ||||| || Sbjct 22941 CTGATGCCATGAAGAACCGCATCATTGCCGAGAACGGT---TCCATTCAGAACATTCCCA 22885 Query 55713 AGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 | || || | || | |||||| | ||| ||| || ||||||||| | ||| | Sbjct 22884 ATATCCC-CGCCGACATCAAGGCTCTCTACAAGACTGTTTGGGAGATTTCTCAGCGTCAT 22826 Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831 | || | ||| || ||||| ||||| | ||||||||||||||||| || ||| | Sbjct 22825 GTTATCCAGATGGCCGCCGATCGCGGTGCTTTTATCGACCAGTCCCAGTCGCTCAACGTT 22766 Query 55832 TTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 |||| || ||||| | ||| |||| | | ||| ||||||||| || |||||| | Sbjct 22765 CACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTG 22706 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 || ||||||||||| |||||||| |||| || Sbjct 22705 GGTCTCAAGACGGGCATGTACTACTTGCGCAC 22674 >seq352 Length=35505 Score = 102 bits (112), Expect = 9e-17 Identities = 202/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| | || || | ||||| ||||| |||||||| || || | || || Sbjct 20637 CGGGTGAAGGTATAACGAGGACTGGCAGCATCGGAACCACCTGCGAGACGGGAACCGAAG 20578 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || ||||| |||| |||| ||||||| || | || ||||| ||||| Sbjct 20577 TTACCGCTTGGCTCCAGGATATTGATATTGTTGGATCCAATAAAGTTCTGTGCCAAGCCG 20518 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | |||||| ||||| || |||||||||||||| || |||||||| | || || Sbjct 20517 ATAATCGTCTGTTGCAGCGAGGCCTCACCGTGGTGATATGCAGTCTGCTCAGAGACATAA 20458 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || || | | | | ||||| | ||| | ||| || ||| | |||||||| | Sbjct 20457 CCAGCGAGTTCCACAACCTTTTTATCCTTGACCAGATTTCGCTTAAAGCAGGCGTAGAGA 20398 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| ||||| |||||||||||||| | ||| || || |||||| || |||| Sbjct 20397 ACCTTTCGCTGACCAGGTTTCAAACCGTCAATGACGGACGGGATAGAACGCATGTTGTC 20339 >seq831 Length=19096 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| | || || | || || ||||| |||||||| || || | || || Sbjct 14568 CGGGTGAAGGTATAACGAGGACTAGCAGCATCGGAACCACCTGCGAGACGGGAACCGAAG 14509 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || ||||| |||| |||| ||||||| || | |||||||| ||||| Sbjct 14508 TTACCGCTTGGCTCCAGGATATTGATATTGTTGGATCCAATAAAATTCTGTGCCAAGCCG 14449 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | |||||| ||||| || |||||||||||||| || |||||||| | || || Sbjct 14448 ATAATCGTCTGTTGCAGCGAGGCCTCACCGTGGTGATATGCAGTCTGCTCAGAGACATAA 14389 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || || | | | | ||||| | ||| | ||| || ||||| || || || | Sbjct 14388 CCAGCGAGTTCCACAACCTTTTTATCCTTGACCAGATTTCGCTTGAAGCAAGCATAGAGA 14329 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||| ||||| |||||||| ||||| | ||| || || |||||| || Sbjct 14328 ACCTTTCGCTGACCAGGTTTCAAGCCGTCAATGACGGACGGGATGGAACGCATG 14275 >seq189 Length=49780 Score = 84.2 bits (92), Expect = 2e-11 Identities = 229/342 (67%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 130871 GTCGTCCACTTTGCAGCGCAGTCATTTGTGGATCTGAGTTTCGAGCAGTCGTTCCAGTTT 130930 ||| | || ||||| |||||||| |||||| ||||||| | | |||| | ||| Sbjct 24549 GTCATGCATTTTGCTGCGCAGTCTCATGTGGACTTGAGTTTTGGAAACTCGTACAGTTTT 24608 Query 130931 ACACGGGACAATGTGCTCGGAACTCATGTCCTACTCGAGACGGTTCGCAATTATGGCAAG 130990 || | | ||| ||| || || || || | || |||| || || | | || | Sbjct 24609 ACCCACGCCAACGTGTATGGGACGCACGTTTTGCTGGAGA--GT--GCCAGGAAGGTTCG 24664 Query 130991 ATTCAG-CGTTTCGTGCACGTGAGCACGGACGAGGTGTACGGTGAGGT---TGATGGTCA 131046 | |||| || ||| | ||||| ||||| ||||||||||| || || || | | | Sbjct 24665 AATCAGACGCTTCATACACGTATCTACGGATGAGGTGTACGGAGAAGTGAAGGAGGATGA 24724 Query 131047 CG-TGACGTGTGACGAGACGGCAGCA--TTAAACCCAATGAATCCCTACGCGGCAAGCAA 131103 || |||| || | ||| | ||| | || ||||| ||| || ||||| || ||||| Sbjct 24725 CGATGACTTG-GTCGAATC--CAGTATCTTGTCCCCAACGAACCCATACGCAGCGAGCAA 24781 Query 131104 AGCGGCTGCTGAGCTCTATGTCCGGGCGTACACCAAGTGCTACAACCTACCGTGCATCAT 131163 ||| || ||||| | ||||| | |||| |||| ||| ||| || || |||||| Sbjct 24782 AGCAGCGGCTGAAATGCTTGTCCAATCTTACAACAAGAGCTTCAAGCTCCCAACCATCAT 24841 Query 131164 TACACGCGGAAACAACGTGTTTGGGCCGAAGCAATACCCGGA 131205 | || | |||||||||| ||||||| | || || || || Sbjct 24842 TGTTCGAAGCAACAACGTGTATGGGCCGCACCAGTATCCCGA 24883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547057977699600