Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq13 122 8e-23 seq39 116 3e-21 seq864 114 1e-20 seq86 105 6e-18 >seq13 Length=129688 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| |||||| |||| || | ||||| ||| | || Sbjct 71178 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 71119 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||| |||||||| || || || || Sbjct 71118 GATACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 71059 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||||| | || | || || || || | || || | ||| | || ||||| ||||| Sbjct 71058 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGA-TGGCCGAACTTTGTCCGACTACAA 71000 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || || |||||||| ||||| |||||||||| || Sbjct 70999 TATTCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTGCGGGGTGGTAT 70949 >seq39 Length=88371 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || || ||||||||| | |||||||| || || || ||| Sbjct 31521 CCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGT 31462 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | ||||| | ||||| || ||||| ||||| ||||| || || || || | Sbjct 31461 CTGATACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAAGGAATCCCCCCTGACC 31402 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| |||| | ||| || || || | || ||| | || |||| ||||||| Sbjct 31401 AGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACA 31342 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| || | || | ||| | || | || ||||| || Sbjct 31341 ACATTCAGAAGGAGTCAACACTTCACCTCGTTCTCCGCCTTCGAGGTGGTAT 31290 >seq864 Length=18104 Score = 114 bits (126), Expect = 1e-20 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 26981 ATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA 27040 |||| |||| ||| | | || || |||||||| |||||| | || || ||||| || || Sbjct 8300 ATACACCATTCAGTT--TCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGA 8357 Query 27041 ACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 | || ||| |||| || | ||||| ||||| |||||||| || ||||| || || Sbjct 8358 GTCCTCGGACACGATCGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCC 8417 Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 ||||| ||||| || || | ||| ||||| || | || ||| || ||| | ||||| Sbjct 8418 TGATCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGA 8477 Query 27161 TTACAACATTCAAAAGG 27177 ||||||||||| |||| Sbjct 8478 CTACAACATTCAGAAGG 8494 >seq86 Length=67758 Score = 105 bits (116), Expect = 6e-18 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 26981 ATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA 27040 |||| |||| ||| | | || || || ||||| |||||| | || || ||||| || || Sbjct 45399 ATACACCATCCAGTT--TCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGA 45456 Query 27041 ACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 | || ||| |||| || | ||||| ||||| |||||||| || ||||| || || Sbjct 45457 GTCCTCGGACACGATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCC 45516 Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 || || ||||| || || | ||| ||||| || | || ||| || ||| | ||||| Sbjct 45517 TGACCAGCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGA 45576 Query 27161 TTACAACATTCAAAAGG 27177 ||||||||||| |||| Sbjct 45577 CTACAACATTCAGAAGG 45593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434792806439040