Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq39 96.9 2e-15 seq633 84.2 2e-11 >seq39 Length=88371 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || | ||||| || |||||| | || |||||| | Sbjct 30762 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 30703 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| |||||| || || || || || ||| | || || | Sbjct 30702 GATACCATCGACAAT--GTCAAATCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACC 30645 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | |||||||||||||| || |||| |||| |||| || ||| |||| Sbjct 30644 AGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACA 30585 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || |||||||||||| | || | ||| |||| || || Sbjct 30584 ACATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGAGGTGG 30536 >seq633 Length=24846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| ||| |||||||| | || ||||| || || || | || Sbjct 20056 GACAAGGAGGGCATTCCCCCGGACCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAG 19997 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | || ||| ||||||||||| || |||||||| |||||||||| || Sbjct 19996 GATGGCCGCACCCTGAGCGACTACAACATCCAGAAGGAGAGCACCCTGCATTTGGTGCTG 19937 Query 28003 CGTTTGCGTGGCGG 28016 || |||||||||| Sbjct 19936 CGCCTGCGTGGCGG 19923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355762204939554