Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq39 100 2e-16 seq1283 86.0 4e-12 seq633 86.0 4e-12 >seq39 Length=88371 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || || |||||||| || || || | Sbjct 31519 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 31460 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || | || | || ||||| ||||| | || || || || Sbjct 31459 GATACTATTGACAATGTCAAGTCGAAGA-TTCAGGACAAGGAAGGAATCCCCCCTGACCA 31401 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| |||| || || || || || || || |||| |||||| | |||||||| Sbjct 31400 GCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAA 31341 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || || ||||| ||| Sbjct 31340 CATTCAGAAGGAGTCAACA 31322 >seq1283 Length=10397 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||||||||| || |||||||| || || || || || Sbjct 2535 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 2594 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || || Sbjct 2595 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 2654 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || | || ||||| || || || || || || | ||||| || |||| ||| Sbjct 2655 CAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCTTGAGCGACTAC 2714 Query 23788 AACATACAAAAAGAG 23802 ||||| || || ||| Sbjct 2715 AACATCCAGAAGGAG 2729 >seq633 Length=24846 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||||||||| || |||||||| || || || || || Sbjct 20152 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 20093 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || || Sbjct 20092 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 20033 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || | || ||||| || || || || || || | ||||| | |||| ||| Sbjct 20032 CAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 19973 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || ||| ||| | ||||| || Sbjct 19972 AACATCCAGAAGGAGAGCACCCTGCATTTGGT 19941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337914431495816