Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq539 111 1e-19 >seq539 Length=27760 Score = 111 bits (122), Expect = 1e-19 Identities = 334/508 (66%), Gaps = 16/508 (3%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| ||||| |||||||| |||||||| || || ||||| | || ||||| ||| Sbjct 8516 TTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTT 8457 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||| || || || | | ||||| ||||| ||||| || | Sbjct 8456 TCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAAT 8397 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-A 4435 | || || || |||||||| || || || |||| ||| | ||| || || | | | Sbjct 8396 AGGCGATCGGCGACAAATTCAATGTATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGA 8337 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || || || | |||||||||||||| || || || || || ||||| || Sbjct 8336 GCACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAAT 8278 Query 4496 ATCTTTTATTTTATCTT--TAGATGGTTTATTTACTAAGTATCCAA--ACAATAAACACG 4551 ||| | | || ||| | | ||| | | | || || | | ||| | ||| | Sbjct 8277 ATCCTGAA---TAACTTGCTTGCTGGCTCGGTGCTTTAG-ATGCGAGTGCAACAGACAGG 8222 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||| || |||||||| || || | | || ||||||||||| || || | || | Sbjct 8221 CAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGACCTG 8162 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | ||| | ||| || ||||| || || | |||||| | || ||||| || | Sbjct 8161 GCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATAC 8102 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG---CTTTGTCTTTAA 4728 | || || || || || || || || || ||| |||||| | ||||| | || Sbjct 8101 CCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGA---AGCTGGAATCCTTGTCCTGAA 8045 Query 4729 TCCATTTTAATGCCCAGTTAGCtttttt 4756 |||| | ||||||| |||||||| Sbjct 8044 TCCAACGAATGGCCCAGTCTGCTTTTTT 8017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426929361782966