Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq539 95.1 2e-14 seq15 89.7 7e-13 >seq539 Length=27760 Score = 95.1 bits (104), Expect = 2e-14 Identities = 197/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 ||||||| ||| |||| || | ||| || |||| |||||||||||||| || Sbjct 7903 TCTTTAATGTAGCTATCGATCAGGAGAGAGTATGTTTCAGAGTGAATATTTTCCATCATG 7844 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| ||||| || || || | || || | | ||| ||||| | || || ||| Sbjct 7843 ATCTGGAATCCATAGAAGCAGCGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCA 7784 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 | || ||||| || || || ||| ||||||||| ||||| || | ||| ||| Sbjct 7783 AGAAGGTTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAAATG 7724 Query 48582 AAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 48638 || ||||| |||| | ||| | || ||||| || | | ||||| || | ||| Sbjct 7723 AAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCTTTGGACAGATCG 7664 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||| || ||||| || || || || || || || ||||| | ||| || Sbjct 7663 ATCTCTTCGGCCGTCCAGAAAGAGGCTTCAGCCTTCTTGTACATTTGCCAGAT 7611 >seq15 Length=125974 Score = 89.7 bits (98), Expect = 7e-13 Identities = 196/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 ||||| | ||| |||| || | ||| || |||| ||||||||||| || || Sbjct 19512 TCTTTGATGTAGCTATCGATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATG 19571 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| ||||| || || || | || || | | ||| ||||| | || || ||| Sbjct 19572 ATCTGGAATCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCA 19631 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 ||| || ||||| || || || ||| ||||||||| ||||| || | ||| || Sbjct 19632 AGCAAGTTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATG 19691 Query 48582 AAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 48638 || ||||| |||| | ||| | || ||||| || | | || || || | ||| Sbjct 19692 AAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCG 19751 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||| || ||||| || || || || || || |||||||| | ||| || Sbjct 19752 ATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAAT 19804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694468197017280