Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq258 206 4e-48 seq248 203 5e-47 seq15 116 5e-21 >seq258 Length=42171 Score = 206 bits (228), Expect = 4e-48 Identities = 980/1544 (63%), Gaps = 30/1544 (2%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||| |||| ||| || | || |||||| || || ||||| || | | Sbjct 15530 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 15471 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||||| |||| |||||| | || || || || ||||| || || | || || Sbjct 15470 TCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAG 15411 Query 75842 TTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 || | | ||| ||| || |||| | || || |||| | ||| ||||| | || | Sbjct 15410 TTGCGAATACC--GTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAG 15353 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTA 75958 | || |||| ||| | ||| |||| ||||| || || | || | || || || Sbjct 15352 AAGGCTTGACATTCCACATGTCGAATTGAAGAATACC-TTCCGAGGCGGGAGAGCCCTTG 15294 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 | || ||| | || | || || || || || | || | ||| ||| Sbjct 15293 AAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGG 15234 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 || || || ||||| |||| ||| || || || | || || || || || || Sbjct 15233 TAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATG 15174 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | | | || ||| || || || || |||||||| |||| ||| || |||| ||||| | Sbjct 15173 CGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGC 15114 Query 76139 TTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGA 76198 | ||| | ||| || ||| ||||||| || | ||| || || || ||||| Sbjct 15113 ATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGG 15054 Query 76199 TTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATC 76258 || | ||| || |||| | || || | || || | || || | || ||| | Sbjct 15053 TTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTG 14994 Query 76259 ------ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 || || | || || | ||| || | || ||||| || ||||||| | Sbjct 14993 TAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCGGG- 14935 Query 76313 TTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 |||| || | || ||||||||||| || || | || ||||| || || Sbjct 14934 --GGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTC 14877 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 | |||||||||||| |||| || | ||||| || || | ||| || | || ||||| Sbjct 14876 TTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCG 14817 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATC-- 76487 |||| || |||| || || | ||||| | ||| | | |||| ||| | Sbjct 14816 GTCTGGGACTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA--ATAGTCTTGCGGCCA 14760 Query 76488 -GCTTCTCTCTTTCATATTGT--GTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 | ||| | ||||| | | ||| | | || |||||||| || || | |||| Sbjct 14759 CGGCCCTCACGCTCATACTTTTCGTAGAGAGCC--TCAAATTCCTCGCCATAGCAATCAG 14702 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 ||| ||||| || || || |||||||| | | ||| || || | | | || || | Sbjct 14701 CCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCT 14642 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 |||| |||||||| || ||||| ||||||| || || || || | | | |||||| | Sbjct 14641 TCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCT 14582 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 | || |||||| | ||| || || || | | || | ||||| || || || | Sbjct 14581 TACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGT 14522 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | || || | |||| ||||| || ||||| ||||| || | |||||||||||||| | Sbjct 14521 AGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGT 14462 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844 | | || | | ||| ||||| |||||||| |||||||| || || || | ||| ||| Sbjct 14461 TGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAG 14402 Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904 || ||||| || | | ||| ||||| || ||||| || ||||| | Sbjct 14401 AGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCA 14342 Query 76905 GAGCACAGCGT-TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963 ||||| ||| || | ||||| ||||| || || || || || ||| |||||| | Sbjct 14341 TGGCACA-CGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACT 14283 Query 76964 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCA 77023 || |||||| ||||| ||| || || || || || || | |||||| || || Sbjct 14282 AGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCG 14223 Query 77024 TGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCAT 77083 || ||||| || || | || | ||| || || | ||| || |||| | Sbjct 14222 TGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCT 14163 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143 ||| || || || || ||||| | ||| ||||| ||||| || ||| |||| Sbjct 14162 CCCCAAATACCGACGGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCG 14103 Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203 || | ||| | | |||||| | |||| ||| || || ||||| || | || ||| Sbjct 14102 TTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAG 14043 Query 77204 TCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTT 77247 ||||| ||||| | |||| | || | || | ||||| | ||| Sbjct 14042 TCTCTGTCGTAGACAATAGCGGAGTCAAGCTCCTCCTTGTGTTT 13999 >seq248 Length=42843 Score = 203 bits (224), Expect = 5e-47 Identities = 781/1219 (64%), Gaps = 22/1219 (2%) Strand=Plus/Plus Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 ||| ||| ||||| || |||||||| | ||| || || || | || || || || Sbjct 23280 GCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCG 23339 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 || || | | | || ||| || || || || |||||||| |||| ||| || ||| Sbjct 23340 AAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGT 23399 Query 76130 CTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATT 76189 | ||||| | | ||| | ||| || ||| ||||||| || | ||| || || Sbjct 23400 CGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATC 23459 Query 76190 TTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTT 76249 || ||||| || | ||| || |||| | ||| || | || || | || || | Sbjct 23460 TTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGG 23519 Query 76250 CCATCTATC------ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACC 76303 || ||| | || || | || || | ||| || | || ||||| || ||| Sbjct 23520 CCTTCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACC 23579 Query 76304 TCATTAGCATTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTT 76360 |||| || |||| || | || ||||||||||| |||||| | || ||| Sbjct 23580 TCATCAGG---GGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTT 23636 Query 76361 CCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTT 76420 || ||||||| ||||||||||| |||| || | || || || || | ||| || | Sbjct 23637 CCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTG 23696 Query 76421 CCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGAT 76480 || ||||| |||| | |||| || || | ||||| | ||| | | |||| Sbjct 23697 CCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA--ATAGTC 23753 Query 76481 TTGTATC---GCTTCTCTCTTTCATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCC 76535 ||| | | ||| | ||||| || | ||| | | || ||||| || || || Sbjct 23754 TTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCAT 23811 Query 76536 AAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCT 76595 | |||| ||| ||||| || || || |||||||| | | ||| || || | | | Sbjct 23812 AGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTT 23871 Query 76596 TAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAC 76655 || || ||||| || ||||| || ||||| ||||||| || || || || | | Sbjct 23872 CGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGT 23931 Query 76656 GTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715 |||||| || || |||||| | ||| || || || | | || | ||||| | Sbjct 23932 TTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAG 23991 Query 76716 GTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGG 76775 | || || || || || | |||| ||||| ||||| || ||||| || | ||||||| Sbjct 23992 GCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATCTGG 24051 Query 76776 CAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAG 76835 ||||||| || | || | | ||| ||||| |||||||| |||||||| || || || | Sbjct 24052 CAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGG 24111 Query 76836 AAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTT 76895 ||| ||| || ||||| || | | ||| || || || ||||| | Sbjct 24112 CAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCT 24171 Query 76896 TAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA 76955 | ||||| | |||||| || | ||||| ||||| || || || || || ||| ||| Sbjct 24172 TGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCA 24231 Query 76956 TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAG 77015 ||| || || |||||| ||||| ||| || || || || || || | ||||| Sbjct 24232 TGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAG 24291 Query 77016 GAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTA 77075 | || || || ||||| || || | || | ||| || || | ||| ||| | Sbjct 24292 GTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGTTCGA 24351 Query 77076 TATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAG 77135 | | | ||| || || || || ||||| | ||| ||||||||||| || || Sbjct 24352 TGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGA 24411 Query 77136 TCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 77195 |||| || | ||| | | |||||| | |||| ||| || || ||||| || | | Sbjct 24412 TCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGAT 24471 Query 77196 ATGAAAAGTCTCTTTCGTA 77214 | |||||||| ||||| Sbjct 24472 AGTTGAAGTCTCTGTCGTA 24490 >seq15 Length=125974 Score = 116 bits (128), Expect = 5e-21 Identities = 337/516 (65%), Gaps = 7/516 (1%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || ||||| ||||| || || || ||||||||||| || || ||||| | Sbjct 18889 CATAACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAAAAGTTTGTCTTGCCACC 18948 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 ||| || || || ||||| ||||| || || || | || || | |||| || Sbjct 18949 CAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACC 19008 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 | | | | || | ||| || || ||||| ||||| ||||| | | || Sbjct 19009 AAGTGCAACCAATAGACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTT 19068 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||| |||| ||| ||| |||||||| || | ||||||||| ||||| ||||| Sbjct 19069 CATGCCTAGGAGAGCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGC 19128 Query 46566 ATCCGATAT--TATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAAC 46623 || | || |||| | || | || || || | | | ||| | | ||| | Sbjct 19129 GTCGGTGATGATATCCTGGATAAT--TTGCTTGCTGGCTCGGTGCTTAAGATGCGAGTGC 19186 Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 | | |||||||||||| || | || ||||| | || | ||||||||| || Sbjct 19187 AACAGACATGCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAG 19246 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 ||||| || ||||| || |||||||| |||||||| || || | ||| || | || Sbjct 19247 GTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCGCTG 19306 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT- 46802 ||||| ||||| || ||||| ||||| || || | | || || | |||| ||| || Sbjct 19307 AAGAAGATGCCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTG 19366 Query 46803 --ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTC 46836 |||||||| | ||||| || || |||||| Sbjct 19367 TCCTGAATCCAACGAATGGCCCAGTCTGCTTTTTTC 19402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712728522368640