Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq13 141 7e-29 seq39 129 4e-25 seq1283 127 1e-24 seq633 125 5e-24 seq864 86.0 5e-12 >seq13 Length=129688 Score = 141 bits (156), Expect = 7e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||||||||| || || || ||| |||| || Sbjct 71499 ACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCGTCCTCA 71558 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| ||||||||| || | || | || ||||| ||| Sbjct 71559 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCCTGA 71618 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | ||||| || | || || ||||| | ||||| |||| Sbjct 71619 ATCTTCGACTTGACATTGT--CAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTCT 71676 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | || ||||||||||| ||||||||||||||||| Sbjct 71677 TGCCGGTGAGGGTCTTGACGAAGATTTGCATGAT 71710 Score = 129 bits (142), Expect = 4e-25 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| ||||| ||||| ||||| |||||||| || | || ||| Sbjct 71198 ACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCTTCC 71257 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || |||||||| ||||||||||| | ||| | ||||||||| ||| Sbjct 71258 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCCTGA 71317 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| || || ||| | |||||||||| ||| || ||||| | || || |||| Sbjct 71318 ATCTTCGATTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCT 71375 Query 44307 TTCCCGTGAGGGTCTTCAC 44325 |||| || | ||||| || Sbjct 71376 TTCCAGTCAAAGTCTTGAC 71394 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 44141 GTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCG 44200 || || ||||| |||||||| || ||| || ||| |||| ||||||||||| ||| Sbjct 70754 GTACTTTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 70813 Query 44201 GCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTC 44260 ||||| || | || ||||| || | ||| | || ||||| ||| ||||| || Sbjct 70814 GCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTG 70873 Query 44261 AATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTC 44320 | || | ||||| || | ||||| || |||| || || |||||||| || | |||| Sbjct 70874 ACAGTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTC 70933 Query 44321 TTCACGAAGATTTGCAT 44337 || || || |||||||| Sbjct 70934 TTGACAAAAATTTGCAT 70950 >seq39 Length=88371 Score = 129 bits (142), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| || ||||||||||| | || ||| |||| || Sbjct 31311 ACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCG 31370 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||| || | || | |||||||| ||| Sbjct 31371 AGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGA 31430 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | || || || | || || ||||| | ||||| |||| Sbjct 31431 ATCTTCGACTTGACATTGT--CAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCT 31488 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||||||||| ||||||||||||||| Sbjct 31489 TGCCGGTGAGGGTCTTGACGAAGATTTGCATG 31520 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| ||| | | ||| || || | ||||| ||||| ||||||||||| ||| Sbjct 30536 CCACCTCGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTC 30595 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| |||||||| || | || ||||| || | ||| Sbjct 30596 AGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGG 30655 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||| ||||| ||| ||||| || || ||| | ||||| || | ||||| | Sbjct 30656 ATACCCTCCTTATCCTGAATCTTGGATTTGACATTGT--CGATGGTATCAGAAGATTCGA 30713 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| ||||| |||||||| || | |||||| || || |||||||| Sbjct 30714 CTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 30762 Score = 120 bits (132), Expect = 2e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| ||||| ||||| ||||| |||| ||| || | || ||| Sbjct 31010 ACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCC 31069 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || ||||| ||||||||||| | ||| | ||| ||||| ||| Sbjct 31070 AGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGA 31129 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||||| ||| || ||||| | || || |||| Sbjct 31130 ATCTTCGACTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCT 31187 Query 44307 TTCCCGTGAGGGTCTTCAC 44325 |||| || | ||||| || Sbjct 31188 TTCCGGTCAAAGTCTTGAC 31206 >seq1283 Length=10397 Score = 127 bits (140), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGT 44183 || ||||| ||| || ||||||||||| ||||||||||| ||| | || || || | | Sbjct 2750 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGGC-CAT 2692 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTT 44243 | || |||||||| || |||||||| | || ||||| || | || | || ||||| | Sbjct 2691 CCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGT 2632 Query 44244 CCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 || ||||| ||| | | | |||||||||| || |||||||| | || |||| Sbjct 2631 CCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCG 2572 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||||||||| || ||||| || ||||| Sbjct 2571 TCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 2538 >seq633 Length=24846 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| || || ||||||||||| ||||||||||| ||| Sbjct 19923 CCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 19982 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || |||||||| | || ||||| || | || Sbjct 19983 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 20042 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||| | | | |||||||||| || |||||| Sbjct 20043 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 20102 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || |||||||| ||||||||||| || ||||| || ||||| Sbjct 20103 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 20149 >seq864 Length=18104 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| || |||||||| |||| || || |||| || |||||||| || || |||| Sbjct 8494 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 8435 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| ||||||||||| | || | || ||||| || || || ||| || ||| Sbjct 8434 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 8375 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | || || ||||| ||||| || ||||| || Sbjct 8374 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGAC 8317 Query 44326 GAA 44328 ||| Sbjct 8316 GAA 8314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359889042677934