Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq633 159 8e-34 seq1283 158 3e-33 seq39 152 1e-31 seq13 152 1e-31 >seq633 Length=24846 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || ||||||||||| |||||||| || ||| Sbjct 20146 CAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 20087 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || || || |||||||||||| Sbjct 20086 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAA 20027 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 20026 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 19967 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || |||||| Sbjct 19966 CAGAAGGAGAGCACCCTGCAT 19946 >seq1283 Length=10397 Score = 158 bits (174), Expect = 3e-33 Identities = 150/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || ||||||||||| |||||||| || ||| Sbjct 2541 CAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 2600 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || || || |||||||||||| Sbjct 2601 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAA 2660 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||||||||| || || || |||||||| ||||| | || |||| ||| || ||| | Sbjct 2661 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCAC-CTTGAGCGACTACAACAT 2719 Query 178103 CCAAAAAGA 178111 ||| || || Sbjct 2720 CCAGAAGGA 2728 >seq39 Length=88371 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || || || |||||||| || || || Sbjct 31516 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCTGAT 31457 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| ||||||||||| || |||||||| Sbjct 31456 ACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAAGGAATCCCCCCTGACCAGCAG 31397 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| |||||||| || || | |||||| | ||||| ||| | Sbjct 31396 CGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAACATT 31337 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || |||||||| || || ||| Sbjct 31336 CAGAAGGAGTCAACACTTCACCTCGTT 31310 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || ||||| || || ||| | || || ||| || || Sbjct 30759 CAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCTGAT 30700 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||||||||| || || || |||||||| ||||||||| Sbjct 30699 ACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAGCAA 30640 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||| || |||||||| ||||| ||||| || | || || ||| || ||| || Sbjct 30639 CGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAACATC 30580 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||| || ||||||| || Sbjct 30579 CAGAAGGAAAGCACTTTGCATCTCGT 30554 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || ||| | || ||||| || |||||||| ||||| || ||| ||||||||||| Sbjct 31206 GTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGAC 31147 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| ||||||||||| || || || |||||||| || ||||| ||| | || Sbjct 31146 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATT 31087 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || ||||| |||||||| | || || |||| || || |||| || ||| Sbjct 31086 TTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAATATCCAGAAGGAA 31027 Query 178113 TCAACACTGCATCTTGT 178129 || || || || || || Sbjct 31026 TCCACCCTTCACCTCGT 31010 >seq13 Length=129688 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || ||| | || ||||| || |||||||||||||| || ||| ||||||||||| Sbjct 71394 GTCAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGAC 71335 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || |||||| ||||||||||| || ||||| || ||||| || ||||| ||| | ||| Sbjct 71334 AATGTCAAATCGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGATC 71275 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || ||||| |||||||| | || || ||||| || || |||| || ||| Sbjct 71274 TTCGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGAAGGAA 71215 Query 178113 TCAACACTGCATCTTGT 178129 || || || || ||||| Sbjct 71214 TCCACTCTTCACCTTGT 71198 Score = 143 bits (158), Expect = 6e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || ||||| || |||||| | || || ||| || || Sbjct 70947 CAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCTGAT 70888 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | |||||| ||||||||||| || || ||||||||||| ||||||||| Sbjct 70887 ACCATCGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAGCAA 70828 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||| || |||||||| ||||| ||||| || | || || ||| |||||| || Sbjct 70827 CGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTATAACATC 70768 Query 178104 CAAAAAGAA 178112 || || ||| Sbjct 70767 CAGAAGGAA 70759 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 |||| | ||||| ||||| || || ||||| || || || || || |||||||| || Sbjct 71712 AAATCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGT 71653 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 || || ||||| || || ||||| ||||||||||| || || |||||||| || | Sbjct 71652 CGTCTGATACCATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAATCCCCCCCG 71593 Query 178036 ACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATT 178095 ||||||| || || |||||||| ||||| ||||| || || || | |||||||| || | Sbjct 71592 ACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTTGCTGACT 71533 Query 178096 ATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||| |||| || || ||||| || || || || Sbjct 71532 ACAACATCCAGAAGGAGTCAACCCTTCACCTCGT 71499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203374902335788