Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq633 163 3e-35 seq1283 150 2e-31 seq86 123 2e-23 seq864 120 3e-22 seq39 104 2e-17 seq13 93.3 4e-14 >seq633 Length=24846 Score = 163 bits (180), Expect = 3e-35 Identities = 178/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || ||||| || || || | ||||| |||||| |||||||||||||| ||||| |||||| Sbjct 19920 CCACCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 19979 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 |||||||| | || ||||||||||| || || || || || || || ||||||| | Sbjct 19980 CTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGG 20039 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 |||| || |||||||||| ||| || ||| ||| | | | |||||| ||||| Sbjct 20040 GGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTC 20098 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||| | || ||||| || ||||| || || || |||||||||||||| || Sbjct 20099 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 20152 >seq1283 Length=10397 Score = 150 bits (166), Expect = 2e-31 Identities = 176/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || || | ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 2768 ACCACCACCACGAAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 2709 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | | |||||| | || ||||||||||| || || || || || || || ||||||| Sbjct 2708 GCTCAAGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGG 2649 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 ||||| || |||||||||| ||| || ||| ||| | | | |||||| |||| Sbjct 2648 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACT 2590 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| | || ||||| || ||||| || || || |||||||||||||| || Sbjct 2589 CCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 2535 >seq86 Length=67758 Score = 123 bits (136), Expect = 2e-23 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| |||||||| ||||| || |||| || ||||||||||| ||||| | Sbjct 45593 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAA 45534 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| ||||| | ||||| || ||||||||| |||||| ||| || | Sbjct 45533 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGT 45474 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 45473 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 45416 Query 41851 GAAA 41854 |||| Sbjct 45415 GAAA 45412 >seq864 Length=18104 Score = 120 bits (132), Expect = 3e-22 Identities = 138/184 (75%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| |||||||| ||||| || |||| || ||||||||||| ||||| | Sbjct 8494 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 8435 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| || || | ||||| || ||||||||| |||||| ||| || | Sbjct 8434 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 8375 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 8374 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGAC 8317 Query 41851 GAAA 41854 |||| Sbjct 8316 GAAA 8313 >seq39 Length=88371 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| || || || || ||||| |||| ||||||||||| || ||||| Sbjct 31328 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 31387 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| ||||| | ||| | | ||||||||| ||| | || | | || Sbjct 31388 GATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC-TGAATCTTCGACTTGACAT 31446 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||| || |||||| ||||| | || || || || || || || ||||| | Sbjct 31447 TGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 31506 Query 41850 CGAAAATCTGCATG 41863 |||| || |||||| Sbjct 31507 CGAAGATTTGCATG 31520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || | |||||| || |||||||||||| || |||||||| Sbjct 30764 CCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 30823 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||||||||| || || || || || ||||| ||||| | |||| Sbjct 30824 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 30883 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||| | | ||| | || | ||| || || | || || || || Sbjct 30884 ATGCCTTCCTTAT-CTTGAATCTTAGACTTTACATTATCG--ATCGTATCCGAGGATTCA 30940 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || || || || |||| ||||| ||||| |||||||| Sbjct 30941 ACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 30990 >seq13 Length=129688 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| |||| || || || |||||||| |||||||||||| Sbjct 70724 CCACCACGCAGACGAAGCACGAGATACAAAGTACTTTCCTTCTGGATGTTATAGTCGCTC 70783 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || |||||||| ||||| || || || || || ||||| | || Sbjct 70784 AGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGG 70843 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | || || | | | || || || || || Sbjct 70844 ATTCCCTCCTTATCC-TGAATCTTGGATTTGACAGTGTCGATGGTATCAGAAGATTCGAC 70902 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| ||||| || ||||| ||||| Sbjct 70903 TTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 70950 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || |||||||||||| || |||||||| Sbjct 70952 CCACCCCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 71011 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||||||||| || || || || || ||||| ||||| | |||| Sbjct 71012 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 71071 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || || | || | | || || || || || Sbjct 71072 ATGCCTTCCTTGT-CTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGAC 71130 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| ||||| ||||| |||||||| Sbjct 71131 TTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 71178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462170498162400