Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq19 134 3e-26 seq5 93.3 9e-14 >seq19 Length=853957 Score = 134 bits (148), Expect = 3e-26 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || || || || ||| |||||||| | | |||||| | || ||| Sbjct 675890 ATCATCACCGAGGCCGTCACAATCGAGCAGGAGTTCCTGTCTGACGCCCTCCCTTGTGCG 675831 Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || | ||||||||||| | || ||| | ||||||||||| ||||| || || ||| | Sbjct 675830 CTGCTCGGCATGAACGCCGGCCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGCCTA 675771 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | | || ||||| || || |||||| ||| |||||||| | || |||||| Sbjct 675770 CTGTTGGCTCTTGGCAACCCCAAGCACTACAACGCTACCAACCCCTTCGACTTCATGGAG 675711 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 ||| |||||| || ||||||||||||||||| ||||| || ||||||| |||| | Sbjct 675710 AACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTACCAGAAG 675651 Query 230626 CCTGGTGTGATG 230637 ||||||| ||| Sbjct 675650 GCTGGTGTCATG 675639 >seq5 Length=1634729 Score = 93.3 bits (102), Expect = 9e-14 Identities = 202/302 (67%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 319368 AAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTT 319427 ||| | |||||| ||| |||||| || ||| || || |||| || || ||||| Sbjct 1144075 AAGAGTGTAGTAGCTCTTGCCTTCGGGCTTCTGCTTGACAAAGTCGGCAAGGTTACCCTT 1144134 Query 319428 GTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAG 319487 ||| || ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 1144135 GTAGCAGACCAACTTC---TTCTGTTCGTAATGGTAGATGTCTGTGCAGACAGCATCGAG 1144191 Query 319488 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTC 319547 ||| || |||||||| || ||||||| || | | || | || | | ||||| || Sbjct 1144192 GAATCCAGAGTCGTGGGAAACAATCAAGCTGGTGATCTCAGTGTGGCTCTTGAGGTACTC 1144251 Query 319548 AATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAG 319607 | ||| ||||| | ||| | ||| ||||| |||||||| || | ||| | Sbjct 1144252 CTGAAGCCAAGCGACGTTGGCAACATCCAAATGATTGGTAGGCTCGTCGAGCAACAGAAC 1144311 Query 319608 CTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 | ||| || ||||| ||||| || | |||||| ||||| ||||| ||||| || || Sbjct 1144312 GTCAGCGCGCATAAGCATAGCACGGGCCAAAGCGAGCTTCATCTTCCAACCTCCAGACAG 1144371 Query 319668 AG 319669 || Sbjct 1144372 AG 1144373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057820923385010