Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 163 3e-35 >seq3 Length=2655511 Score = 163 bits (180), Expect = 3e-35 Identities = 381/565 (67%), Gaps = 10/565 (2%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||| | | |||||| |||| |||| || || | |||||||||||| |||||| Sbjct 1394364 GGGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATC 1394305 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || ||||| || ||||| | | | | ||||| || || ||||| | || Sbjct 1394304 CACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGG 1394245 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 |||||||| | | | |||| |||||||| || | ||| |||| | | ||||| Sbjct 1394244 TCGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGG 1394185 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | || | || ||||| || ||||| | | ||| ||| Sbjct 1394184 CGCTTGTTGCCACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGA 1394125 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--AT 54293 || | ||| || |||| || ||||| || ||||||| ||| |||||||||| Sbjct 1394124 ATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGG 1394065 Query 54294 TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353 | ||| || || || || || || | || ||||| || |||||| || | | Sbjct 1394064 TGGACGTTG--AGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTG 1394007 Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413 | || ||||| ||||| || || || ||| |||||| | || || ||| ||||| | Sbjct 1394006 TGTCGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCT 1393947 Query 54414 GGTGACGAC-TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 ||| ||| || || || || || | || || || ||||| || || | || | Sbjct 1393946 -GTGGGGACGGTGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGC 1393888 Query 54473 GA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTG 54530 || | |||| | ||| ||||||||||| || || ||| | || || || || || | Sbjct 1393887 GACATGTAG-TCGTATGTCTCGATAGCCTTCTCGATGTCCTCCATG-TGGATGCCAACAG 1393830 Query 54531 CGACACGCATTAACATGTGCTGAGG 54555 |||||||||| | ||||||||| || Sbjct 1393829 CGACACGCATGAGCATGTGCTGGGG 1393805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 201/302 (67%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 52796 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 52855 |||| ||| | ||||| || ||||| || || || | | || || || ||||||||| Sbjct 1395573 TCCTGGTCGACAGTGAACTGGATGGGCGCAGAGGCAGCCATGGTTCGGAGGTAGTACATT 1395514 Query 52856 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTC 52915 || || || || || || ||||||| || ||||| ||| | ||| | | Sbjct 1395513 CCGGTCTTGAGGCCAAGCTTCCATCCAGCGAAGTGCATGGATGTGATCTTGCCCATAGTA 1395454 Query 52916 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 52975 || || || ||||| |||| ||| ||| |||||||||||||| || | ||| ||| Sbjct 1395453 GGCTCCTTCATGTGGATGTTCAGAGACTGAGACTGATCGATGAAGGCACCACGGTCAGCA 1395394 Query 52976 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 53035 ||||| | ||||| || || | |||||||| | ||| || || | ||| || Sbjct 1395393 GCCATCTGGATGATGGTACGCTGCGAGATTTCCCAGACAGTCTTGTAGAGAACCTTGATC 1395334 Query 53036 TCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTG 53092 || || |||| ||| | | ||| || |||||||| || | || || | ||||| Sbjct 1395333 TCGTCAGGAATGTTAGGGATGCGCTGGATGGATCCACCCTCGGCAATGATGCGGTTCTTC 1395274 Query 53093 AT 53094 || Sbjct 1395273 AT 1395272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719915314960