Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq19 201 1e-46 seq1 123 3e-23 seq4 116 4e-21 seq2 100 3e-16 >seq19 Length=853957 Score = 201 bits (222), Expect = 1e-46 Identities = 214/282 (76%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| ||||||||||| || |||||||||| || ||| | || || ||| Sbjct 676546 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAAGAGATCGATCTCTCC 676487 Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||||||| ||||||| | |||| | |||||| ||||||| |||||| ||| Sbjct 676486 AAGGACATCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCCAC 676427 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || ||||| ||||| ||| ||| ||||| ||||||||||| || |||||||| ||| Sbjct 676426 GTCCTCGCCTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGCTTC 676367 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | ||||| ||| | | ||||| || |||||||||||||| |||||| |||||| Sbjct 676366 TCGAGCGAGGTACAGATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGGAG 676307 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||| ||| | || | || || |||||||||||| ||| Sbjct 676306 AACGTCCACGCTGAGACATACTCTCTCCTCATCGACACCTAC 676265 Score = 154 bits (170), Expect = 2e-32 Identities = 309/454 (68%), Gaps = 3/454 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| ||||| ||||| | | || | || | |||| | | || | Sbjct 676150 AGAAGGCTGACTGGGCCCTGCGATGGATTTCTGACAAGAACTCCACTTTCGCCAACCGTC 676091 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || ||||| ||||| || || ||||||| || ||||| |||| || | Sbjct 676090 TCGTTGCTTTCGCCGCCGTTGAAGGTATCTTCTTCAGTGGTTCGTTCGCGTCCATCTTCT 676031 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || ||||||||||| || || ||| ||||||||||||||| | | Sbjct 676030 GGCTGAAGAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTG 675971 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| |||| |||||||| || | || ||| | || | || || | Sbjct 675970 ACGAGGGCATGCACACAGACTTTGCTTGCCTTCTCTTCTCTCTGCTGAATAACCGCCCAA 675911 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | ||| | ||| ||||||| || ||| | ||||||||| ||||| Sbjct 675910 GCAAAGAGGCTGTCGCAGCTATCATCACCGAGGCCGTCACAATCGAGCAGGAGTTCCTGT 675851 Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 | || || || || ||||| ||||| || | || || |||| || |||||| Sbjct 675850 CTGACGCCCTCCCTTGTGCG-CTGCTCGGCATGAACGCCGGCCTCATGTGCCAGTACATC 675792 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||||||||| || | || ||| | | || | | | |||||||||||||| | || Sbjct 675791 GAGTTCGTCGCTGATCGCCTACTGTTGGCTCTTGGCAACCCCAAGCACTACAACGCTACC 675732 Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 ||||| | ||||| ||| | |||||| |||| Sbjct 675731 AACCCCTTCGACTTCATGGAGAACATCTCGCTTG 675698 >seq1 Length=4966325 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| | || || || | | | Sbjct 2851399 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 2851340 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | || || ||||| ||||| | ||||| Sbjct 2851339 GACACGATCGACAACG-TCAAGTCTAAGATCCAGGATAAGGAGGGTATCCCACCTGACCA 2851281 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||||| || |||||||| |||| |||||| || ||| ||||| Sbjct 2851280 GCAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAAGACGGGCGCACGCTTTCCGATTACAA 2851221 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 2851220 CATCCAGAAGGAGTCGACACTTCACCTGGT 2851191 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| | || || || | | Sbjct 2851627 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGCTGGAGGTTGAGTCGTCG 2851568 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| ||||| ||||| ||||||| Sbjct 2851567 GACACGATCGACAACG-TAAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCA 2851509 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||| |||| |||| ||||| || |||||||| Sbjct 2851508 GCAGCGTCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACACTTTCGGACTACAA 2851449 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | ||||| || Sbjct 2851448 CATCCAGAAGGAGTCGACGCTCCA 2851425 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| ||||||||| |||| ||||| | |||| | | | |||| ||||| Sbjct 2851831 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCCGATACTATTGACAACG-TCAAGTC 2851773 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| |||||||| ||| | |||||||| || | |||| ||| ||||| Sbjct 2851772 CAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAA 2851713 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | || || ||| ||||||||||| ||||||||| |||| ||||| Sbjct 2851712 GCAGCTTGAGGATGGCCGTACACTCTCTGACTACAACATTCAGAAGGAGTCCACACTGCA 2851653 Query 40893 TCTAGTGTTGCG 40904 || || |||| Sbjct 2851652 CCTCGTTCTGCG 2851641 >seq4 Length=1737036 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || ||||||| ||| ||||| ||||| || Sbjct 1018737 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAG 1018796 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| ||| |||||||||||||||||||||| | || || || || ||| | Sbjct 1018797 GATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTC 1018856 Query 40903 CGCTTGAGGGGCGGCGG 40919 ||| || | || || || Sbjct 1018857 CGCCTGCGTGGTGGAGG 1018873 >seq2 Length=3786261 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || || |||| ||| ||||| ||||| || Sbjct 2400601 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 2400660 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| || || || |||||||||||||||||||||| | || || || Sbjct 2400661 GACGGCCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTTCA 2400710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217738065520