Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 >seq1 Length=4966325 Score = 122 bits (134), Expect = 1e-22 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || ||||| || | | ||| | |||| || | ||| |||||| || || |||||| Sbjct 2851167 TACTGTCCACCACGCAGACGAAGAACCAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAA 2851226 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | || || ||| |||| || ||||||||||| || || || || ||||||||||| Sbjct 2851227 TCGGAAAGCGTGCGCCCGTCTTCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCA 2851286 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129 | || | | |||||| ||| ||| || |||| ||| | | | ||||||||| || Sbjct 2851287 GGTGGGATACCCTCCTTATCCTGGATCTTAGACTTGA-CGTTGTCGATCGTGTCGCTAGA 2851345 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 2851346 CTCAACCTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 2851399 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| || || ||||| || | || || || | Sbjct 2851412 ACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCC 2851471 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| || ||||| ||||| ||||||||||| | || | | |||||| Sbjct 2851472 GTCCTCCAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTT 2851531 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | || | | ||| | | | |||||| ||| || || || | ||||| Sbjct 2851532 GTCC-TGAATCTTCGACTTTACGTTGTCGATCGTGTCCGACGACTCAACCTCCAGCGTGA 2851590 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || || ||||| || ||||| ||||| Sbjct 2851591 TAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | |||| |||| |||||| ||||| ||||| |||| || || || | Sbjct 2851640 ACGCAGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGTGTACGGCC 2851699 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | ||||||||||| | || | || |||||| Sbjct 2851700 ATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTT 2851759 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 || | ||| | || | |||| ||| | | | || ||| || || || |||| ||| Sbjct 2851760 GT-CTTGAATCTTGGACTTGA-CGTTGTCAATAGTATCGGATGACTCGACTTCGAGGGTG 2851817 Query 43146 ATGGTTTTGCCCGT 43159 ||||| ||||| || Sbjct 2851818 ATGGTCTTGCCGGT 2851831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815977467560