Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-22 >seq1 Length=4966325 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| ||||||||| ||||||||||| ||| ||| |||| ||| Sbjct 2851419 ACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTCCTCC 2851478 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| || | ||||| ||||| ||||| | ||||||||||||| | Sbjct 2851479 AACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGA 2851538 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| ||| ||||||| || || |||||| Sbjct 2851539 ATCTTCGACTTTACGTTGTCGATCGTGTCCGACGACTCAACCTCCAGCGTGATAGTCTTG 2851598 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| || ||||| ||||| Sbjct 2851599 CCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||| ||| || ||| |||| ||| Sbjct 2851191 ACCAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGCCCGTCTTCC 2851250 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| ||||| || || | ||||||||| ||| Sbjct 2851251 AGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCAGGTGGGATACCCTCCTTATCCTGG 2851310 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | | ||| ||||||| || || |||||| Sbjct 2851311 ATCTTAGACTTGACGTTGTCGATCGTGTCGCTAGACTCAACCTCCAATGTGATGGTCTTG 2851370 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||||||||| Sbjct 2851371 CCGGTGAGTGTCTTGACGAAGATTTGCAT 2851399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||||||||||||||| ||| || | || || || || Sbjct 2851652 GTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGTGTACGGCCATCCTCAAGCTG 2851711 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || |||||||| ||||| ||||| ||||| || || | ||||||||||| Sbjct 2851712 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 2851762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074106999767