Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 307 9e-79 seq19 109 5e-19 seq1 102 7e-17 >seq3 Length=2655511 Score = 307 bits (340), Expect = 9e-79 Identities = 587/858 (68%), Gaps = 10/858 (1%) Strand=Plus/Minus Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||||||||| || | ||| | |||||||||||||||| | || | || |||||| Sbjct 1394558 TCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGG 1394499 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG- 23236 ||| | ||| | || || ||| | ||||||| | ||| ||| |||| ||| Sbjct 1394498 TCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTGAGCACGGACA-GTCTCACGACCCTTA 1394440 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || | ||||||||| | ||| | || | || || | |||||| ||| || ||| Sbjct 1394439 CCAAGCTTCTCGTACTTCTCGTAAAGGGCAACGAACTCATCGCCGTAAACGTCAGCGAGG 1394380 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| | | | || ||||||||| ||||| || | | || || |||| Sbjct 1394379 CCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATA 1394320 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || ||||| || ||||| ||||||||||| || ||||| || || |||||||| |||||| Sbjct 1394319 AAGAGATCGGGAATCCACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCG 1394260 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| ||| || | ||| | || ||||| || ||||||||||||||||| | | Sbjct 1394259 TGGTTCTTCCTCAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATG 1394200 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 ||||| || || || | ||| ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 1394199 GCAAATGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAA 1394140 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 || | ||||| || | |||||||| || | ||| || | | | || || Sbjct 1394139 ACACGGAGCATGGGAATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCA 1394080 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 | || |||| | ||| |||| || || || || || | | || || |||| |||| Sbjct 1394079 GTGGCACGAATGCGGTGGACGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCG 1394020 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 ||| || || ||||||||||| ||||| |||||||| || || | ||| | ||| Sbjct 1394019 CATGTCTTGAGTGTGTCGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAG 1393960 Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776 || || ||||| || | || ||| | || ||| || ||||| ||||| || Sbjct 1393959 CAGGATGACATCTGTGGGGACGGTGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTG 1393900 Query 23777 AAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 ||||| | |||||| ||| | ||| || ||||| || || |||||||| ||| Sbjct 1393899 AAGTACTTCTGCGACATGTAG-TCGTATGTCTCGATAGCCTTCTCGATGTCCTCCATGTG 1393841 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG---ACCGTGACGCCGTT 23892 || || | ||||| ||||| | ||||| || || | |||| ||| | |||||| Sbjct 1393840 GATGCCAACAGCGACACGCATGAGCATGTGCTGGGGGCGCTCGGCAACCTT---GCCGTT 1393784 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 || || ||||||||| || | || || || ||||| || | | ||||| ||||| Sbjct 1393783 GATGCGGAGCAGATATGAGCGCTCCAATGTCTTGAATCCGAAGAACTGGTAGTTGAAGTC 1393724 Query 23953 ACGATCGTGCACTATGGC 23970 || |||| || ||||| Sbjct 1393723 GCGGTCGTAGACGATGGC 1393706 >seq19 Length=853957 Score = 109 bits (120), Expect = 5e-19 Identities = 295/447 (66%), Gaps = 22/447 (5%) Strand=Plus/Minus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| |||||| | | || | || ||||||||||| |||||||| ||||| || Sbjct 676108 CCACTTTCGCCAACCGTCTCGTTGCTTTCGCCGCCGTTGAAGGTATCTTCTTCAGTGGTT 676049 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 || ||| | || || ||| ||||||| || || || |||||||| || || || || Sbjct 676048 CGTTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCA 675989 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| | || || || |||||||| | || || || ||||| ||||| | | ||||| Sbjct 675988 ACGAGCTCATCTCTCGTGACGAGGGCATGCACACAGACTTTGCTTGCCTTCTCTTCTCTC 675929 Query 58138 ACATTGTCAATAA--ACCGACGC------GGGATCGCATCTTGGACATTATCACCGAGGC 58189 | | ||||| || | || | ||||| || || ||||||||||| Sbjct 675928 ---TGCTGAATAACCGCCCAAGCAAAGAGGCTGTCGCAGCT-----ATCATCACCGAGGC 675877 Query 58190 GGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAA 58249 ||| | ||||| | ||||| | | || ||||| || || ||||||| ||||| Sbjct 675876 CGTCACAATCGAGCAGGAGTTCCTGTCTGACGCCCTCCCTTGTGCGCTGCTCGGCATGAA 675817 Query 58250 CAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGAT 58309 | | | |||| ||||||| ||||| || || || | || || | | || | Sbjct 675816 CGCCGGCCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGCCTACTGTTGG--CT-CT 675760 Query 58310 TGGAGAGC---GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCT 58366 ||| | | || |||||| | | || || || || || ||| | |||||||| Sbjct 675759 TGGCAACCCCAAGCACTACAACGCTACCAACCCCTTCGACTTCATGGAGAACATCTCGCT 675700 Query 58367 CGAGGGCAAGACAAACTTTTTCGAAAA 58393 | |||||||| ||||| ||||| || Sbjct 675699 TGCTGGCAAGACCAACTTCTTCGAGAA 675673 >seq1 Length=4966325 Score = 102 bits (112), Expect = 7e-17 Identities = 170/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || ||||| | || ||||| | | Sbjct 2851399 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 2851340 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| || | || || |||||| Sbjct 2851339 GACACGATCGACAACGTCAAGTCTAAGATCCAGGATAAGGAGGGTATCCCACCTGACCAG 2851280 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || || || ||| |||||||| || | |||||| ||| Sbjct 2851279 CAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAAGACGGGCGCACGCTTTCCGATTACAAC 2851220 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG-TAG-AAGCGGTG 31430 || || || || ||||| ||||| ||||| ||| | ||| | || || || ||||||| Sbjct 2851219 ATCCAGAAGGAGTCGACACTTCACCTGGTTCTTCGTCTGCGTGGTGGACAGTAAGCGGTT 2851160 Query 31431 ACG 31433 ||| Sbjct 2851159 ACG 2851157 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || ||||| | || ||||| |||| Sbjct 2851627 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGCTGGAGGTTGAGTCGTCG 2851568 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| || | || || |||||| Sbjct 2851567 GACACGATCGACAACGTAAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 2851508 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || ||||| ||||| |||||||| ||| Sbjct 2851507 CAGCGTCTCATCTTCGCCGGCAAGCAGTTGGAGGAC 2851472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765135137840