Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 170 2e-37 >seq3 Length=2655511 Score = 170 bits (188), Expect = 2e-37 Identities = 384/566 (68%), Gaps = 12/566 (2%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | | |||||| |||| |||| || || | |||||||||||| |||||| Sbjct 1394364 GGGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATC 1394305 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || ||||| || ||||| | | | | ||||| || || ||||| | || Sbjct 1394304 CACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGG 1394245 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 |||||||| | | | |||| |||||||| || | ||| ||||| | | ||||| Sbjct 1394244 TCGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGG 1394185 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | || | || ||||| || ||||| | | ||| ||| Sbjct 1394184 CGCTTGTTGCCACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGA 1394125 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--AT 63531 || | |||||| ||| | || ||||| || ||||||| ||| |||||||||| Sbjct 1394124 ATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGG 1394065 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | ||| || || || || || || | || ||||| || |||||| || | | Sbjct 1394064 TGGACGTTG--AGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTG 1394007 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA--T 63649 |||| ||||| || || ||||| || || |||||| | || || ||| |||| | Sbjct 1394006 TGTCGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCT 1393947 Query 63650 TTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63709 ||| |||| || || || || || || | || || || ||||| || || | || | Sbjct 1393946 GTGGGGACG-GT-GTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTG 1393889 Query 63710 AGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACT 63767 || | |||| | ||| ||||| ||||| || || ||| | || || || || || Sbjct 1393888 CGACATGTAG-TCGTATGTCTCGATAGCCTTCTCGATGTCCTCCATG-TGGATGCCAACA 1393831 Query 63768 GCGACACGCATTAACATGTGCTGAGG 63793 ||||||||||| | ||||||||| || Sbjct 1393830 GCGACACGCATGAGCATGTGCTGGGG 1393805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815812892560