Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 181 2e-40 >seq3 Length=2655511 Score = 181 bits (200), Expect = 2e-40 Identities = 566/862 (66%), Gaps = 22/862 (3%) Strand=Plus/Minus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674 ||||| || ||||| || || || || ||||||| | | | |||| || || ||| Sbjct 1394655 GCGACGGAAGCCAGGTTGCAGACAGCGACCTCATCCGGTGCAGTGTATTCGATGATCTCA 1394596 Query 79675 GTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 79734 ||||||||||| | ||||| || | || | || || ||||| |||| Sbjct 1394595 GTGCAGAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCA 1394536 Query 79735 GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 79794 |||||||| || || ||||| || ||||||| || |||||| || | ||| || | | Sbjct 1394535 GCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATGGCGTAC 1394476 Query 79795 CAGACGACTC-GAGC-----CTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGT 79848 |||| | || |||| | | | | ||| || | ||||| | | | | || Sbjct 1394475 CAGA-GCTTCTGAGCACGGACAGTCTCAC-GACCCTTACCAAGCTTCTCGTACTTCTCGT 1394418 Query 79849 GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGA 79908 | | || ||||| || || |||| || | | || || || |||| || Sbjct 1394417 AAAGGGCAACG----AACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGG 1394362 Query 79909 CACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAA 79968 ||||| | | |||||| || | |||| || || | |||||||||||| |||||||| Sbjct 1394361 CACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCCAC 1394302 Query 79969 AGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCG 80028 ||||| || ||||| | | | | |||||| || || ||||| | || ||| Sbjct 1394301 AGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCG 1394242 Query 80029 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGT 80088 ||||| | | | |||| |||||||| || | ||| ||||| | | || || || Sbjct 1394241 AGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGCGC 1394182 Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 ||||| || ||||| || | || | || ||||| || ||||| | | ||| ||||| Sbjct 1394181 TTGTTGCCACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATC 1394122 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 80206 | ||| || ||||| || ||||| || ||||||| ||| |||||||||| | Sbjct 1394121 AGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGG 1394062 Query 80207 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 80266 ||| || || || || || || | || ||||| || |||||| || | || | Sbjct 1394061 ACGTTG--AGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGT 1394004 Query 80267 CATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 80326 | ||||| ||||| ||||| || || |||||| | || || ||| ||||| | || Sbjct 1394003 CGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCT-GT 1393945 Query 80327 GACGAC-TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 80385 | ||| || || || || || | || || || ||||| || || | || | ||| Sbjct 1393944 GGGGACGGTGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGCGAC 1393885 Query 80386 A-GTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGA 80443 | |||| | ||| ||||| ||||| || || ||| | || || || || || |||| Sbjct 1393884 ATGTAG-TCGTATGTCTCGATAGCCTTCTCGATGTCCTCCATG-TGGATGCCAACAGCGA 1393827 Query 80444 CACGCATTAACATGTGCTGAGG 80465 ||||||| | ||||||||| || Sbjct 1393826 CACGCATGAGCATGTGCTGGGG 1393805 Score = 96.9 bits (106), Expect = 5e-15 Identities = 203/302 (67%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||| | ||||| || ||||| || || || | | || || || ||||||||| Sbjct 1395573 TCCTGGTCGACAGTGAACTGGATGGGCGCAGAGGCAGCCATGGTTCGGAGGTAGTACATT 1395514 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTC 78825 || || || || || || ||||||| ||| ||||| || | ||| | | Sbjct 1395513 CCGGTCTTGAGGCCAAGCTTCCATCCAGCGAAGTGCATGGATGTGATCTTGCCCATAGTA 1395454 Query 78826 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885 || || || ||||| |||| ||| ||| |||||||||||||| || | ||| ||| Sbjct 1395453 GGCTCCTTCATGTGGATGTTCAGAGACTGAGACTGATCGATGAAGGCACCACGGTCAGCA 1395394 Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 78945 ||||| | ||||| || || | |||||||| | ||| || || | ||| || Sbjct 1395393 GCCATCTGGATGATGGTACGCTGCGAGATTTCCCAGACAGTCTTGTAGAGAACCTTGATC 1395334 Query 78946 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 || || |||| ||| | | ||| ||||||||||| || || || || | ||||| Sbjct 1395333 TCGTCAGGAATGTTAGGGATGCGCTGGATGGATCCACCCTCGGCAATGATGCGGTTCTTC 1395274 Query 79003 AT 79004 || Sbjct 1395273 AT 1395272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266761912280