Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 163 4e-35 >seq3 Length=2655511 Score = 163 bits (180), Expect = 4e-35 Identities = 390/580 (67%), Gaps = 10/580 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | | |||||| || | || | || || | |||| Sbjct 1394379 CCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATA 1394320 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| |||||||| ||||| || ||||| | | | | |||||| || || Sbjct 1394319 AAGAGATCGGGAATCCACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCG 1394260 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| | || |||||||| | | | |||| |||||||| || | ||| ||| Sbjct 1394259 TGGTTCTTCCTCAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATG 1394200 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | || | || ||||| || ||| Sbjct 1394199 GCAAATGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAA 1394140 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| ||||| | ||| || |||| || ||||| || ||||||| ||| Sbjct 1394139 ACACGGAGCATGGGAATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCA 1394080 Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 |||||||||| || ||| || || || || || || | || ||||| || | Sbjct 1394079 GTGGCACGAATGCGGTGGACGTTG--AGGCCAATACCGCCAGCAGTCTTGGAGATCAACG 1394022 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 ||||| || | || || ||||| ||||| || || || ||| |||||| | || | Sbjct 1394021 CGCATGTCTTGAGTGTGTCGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGA 1393962 Query 72392 AACAGCTAGACATTTGGTGACGAC-TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 | ||| ||||| | ||| ||| || || || || || | || || || ||||| Sbjct 1393961 AGCAGGATGACATCT-GTGGGGACGGTGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGT 1393903 Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATT 72508 || || | || | |||| |||| | ||| ||||| ||||| || || ||| | | Sbjct 1393902 GTGAAGTACTTCTGCGACATGTAG-TCGTATGTCTCGATAGCCTTCTCGATGTCCTCCAT 1393844 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 | || || || || ||||||||||| | ||| ||||| || Sbjct 1393843 G-TGGATGCCAACAGCGACACGCATGAGCATGTGCTGGGG 1393805 Score = 104 bits (114), Expect = 3e-17 Identities = 308/472 (65%), Gaps = 5/472 (1%) Strand=Plus/Minus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847 ||||| ||| | || ||||| ||||| | || || || | || || || |||||||| Sbjct 1395574 TTCCTGGTCGACAGTGAACTGGATGGGCGCAGAGGCAGCCATGGTTCGGAGGTAGTACAT 1395515 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGC 70906 || || || || || || ||||||| || ||||| || | ||| |||| Sbjct 1395514 TCCGGTCTTGAGGCCAAGCTTCCATCCAGCGAAGTGCATGGATGTGATCTTGCCCATAG- 1395456 Query 70907 TAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTG 70966 |||| || ||||| || |||| |||||| |||||||||||||| || | ||| | Sbjct 1395455 TAGGCTCCTTCATGTGGATGTTCAGAGACTGAGACTGATCGATGAAGGCACCACGGTCAG 1395396 Query 70967 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAA 71026 ||||||| | ||||| || || | |||||||| | ||| || || | ||| | Sbjct 1395395 CAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCAGACAGTCTTGTAGAGAACCTTGA 1395336 Query 71027 TATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTT 71083 | || || |||| ||| | | ||| ||||||||||| || ||||| || | || | Sbjct 1395335 TCTCGTCAGGAATGTTAGGGATGCGCTGGATGGATCCACCCTCGGCAATGATGCGGTTCT 1395276 Query 71084 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTA 71143 | || | || |||| | | ||| | | | || | ||| || || | Sbjct 1395275 TCATGTTCTCGGTCCAGAGACCCATGTCGACAAGGTCCTTGAGCAACCAAGGGTTGACAA 1395216 Query 71144 CTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTG 71203 | || || ||||||| | || | ||||| |||||| || ||| || || || | Sbjct 1395215 CCTGGAACTCTCCAGCGAGCACACGACGAGAGTAAATGTTCGAGGTGTAGGGCTCGAAGC 1395156 Query 71204 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 |||| || || || | ||| || | || || || || |||||||| || || Sbjct 1395155 ACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGTAGGCATAGGCGCAAC 1395104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137295642520