Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq19 199 6e-46 seq3 114 2e-20 >seq19 Length=853957 Score = 199 bits (220), Expect = 6e-46 Identities = 583/895 (65%), Gaps = 81/895 (9%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| ||||| |||| || || ||||| | |||||| ||||||| ||| Sbjct 676546 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAAGAGATCGATCTCTCC 676487 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 |||||| | |||| ||| | | || | | || ||||| || || || ||| Sbjct 676486 AAGGACATCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCCAC 676427 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | |||||||| || | ||||||||| || |||||||| || || || || || || Sbjct 676426 GTCCTCGCCTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAG-CGCTT 676368 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 ||| ||| | || || |||| ||||| ||||| ||||| |||||||| || Sbjct 676367 CTCGAGCGAGGTACAGATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGGA 676308 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317 |||||| ||| | || | |||||| || || |||| ||||| |||| || ||| Sbjct 676307 GAACGTCCACGCTGAGACATACTCTCTCCTCATCGACACCTACATCAGCGAGCCTAAGCA 676248 Query 125318 ACGTAAACACATGCTC-------TT--TAAC-----------GCA-------------AT 125344 |||| | || || || || |||| ||| || Sbjct 676247 GCGTACATACCTGTTCAACGCTATTGATAACAGTAAGCCACTGCACATCATACGTCTCAT 676188 Query 125345 C---------GACACG-----GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 | |||| | || || | || ||||| |||||| | |||| | || Sbjct 676187 CACCTGTACTGACATGCCCTAGTTCCCTGCATCCGTAAGAAGGCTGACTGGGCCCTGCGA 676128 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| |||| | || || | | |||| || | || || || ||||||||||| || Sbjct 676127 TGGATTTCTGACAAGAACTCCACTTTCGCCAACCGTCTCGTTGCTTTCGCCGCCGTTGAA 676068 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || |||||||| ||| || ||| ||||||| ||||| |||||||| || |||||| Sbjct 676067 GGTATCTTCTTCAGTGGTTCGTTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATG 676008 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 ||||| || || | |||||| | || ||||| ||||||||| | ||| |||||| Sbjct 676007 CCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACAGACTTT 675948 Query 125571 GCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG--- 125627 || || || || || ||||| || | | || | | | |||| Sbjct 675947 GCTTGCCTTCTCTT------CTCTCTGC--------TGAATAACCGCCCAAGCAAAGAGG 675902 Query 125628 --GTCATCAAC-ATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCC 125684 ||| || | || | ||||| ||||| | || || || ||||| || | || || Sbjct 675901 CTGTC-GCAGCTATCATCACCGAGGCCGTCACAATCGAGCAGGAGTTCCTGTCTGACGCC 675843 Query 125685 CTACC-GGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGT 125743 || || || || || | ||||||||| | || |||||| ||||||| ||||| || Sbjct 675842 CTCCCTTGTGCGC-TGCTCGGCATGAACGCCGGCCTCATGTGCCAGTACATCGAGTTCGT 675784 Query 125744 GGCAGATCGTCTACTGTACGAGTTGATTGG---CCGCAAGATTTACAACGCCAAGAATCC 125800 || ||||| ||||||| | |||| || |||| |||||||| | || || Sbjct 675783 CGCTGATCGCCTACTGT---TGGCTCTTGGCAACCCCAAGCACTACAACGCTACCAACCC 675727 Query 125801 CTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||| || |||||| | ||| || || | || ||||||||||| ||||||||| Sbjct 675726 CTTCGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAG 675672 >seq3 Length=2655511 Score = 114 bits (126), Expect = 2e-20 Identities = 330/499 (66%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || |||||||| ||| Sbjct 1394168 CAGGGTGGCAACAAGCGCCCTGGTGCATTTGCCATCTACCTCGAGCCGTGGCACGCTGAC 1394227 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || | ||| |||| || | || ||| ||| || |||| || || | || Sbjct 1394228 GTCTTCGGCTTCCTCGACCTGAGGAAGAACCACGGCAAGGAGGAGGTTCGTGCTCGCGAT 1394287 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || || ||| | || ||| | || ||| |||| ||| | || ||| | Sbjct 1394288 CTCTTCTACGCTCTGTGGATTCCCGATCTCTTTATGCAGCGTGTCCAGGAGAACGGCGAG 1394347 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || ||||| || | || | ||||| ||||| Sbjct 1394348 TGGACTCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACGTTTACGGCGATGAGTTC 1394407 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGA--GGGCCGATACGTGAGACGAGTCGATGCAC 97173 | ||| ||| | |||||| ||| || | |||||||| ||| ||| | Sbjct 1394408 GTTGCCCTTTACGAGAAGTACGAG-AAGCTTGGTAAGGGTCGTGAGACT-GTCCGTGCTC 1394465 Query 97174 GAGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 |||| || ||| | ||||| | ||| ||||||| |||||||| | || | ||| || Sbjct 1394466 -AGAAGCTCTGGTACGCCATTCTTGA-GGCTCAGACCGAGACTGGTAACCCCTTCATGCT 1394523 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||||| | | || | || |||||||| || | || |||||| |||| Sbjct 1394524 CTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTC 1394583 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCT 97351 ||| || ||||| || || | || ||| | | ||||| ||| || || ||| || Sbjct 1394584 CAACCTCTGCACTGAGATCATCGAATACACTGCACCGGATGAGGTCGCTGTCTGCAACCT 1394643 Query 97352 GGCATCGGTCAATCTGCCC 97370 ||| || ||| ||| ||| Sbjct 1394644 GGCTTCCGTCGCTCTTCCC 1394662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057097244520