Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 >seq1 Length=4966325 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 |||||||| |||||| || ||||||||||| | || || ||| |||| |||||||| Sbjct 2851197 TGAAGTGTCGACTCCTTCTGGATGTTGTAATC-GGAAAGCGTGCGCCCGTCTTCCAGCTG 2851255 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || | ||||||||| || || | || ||||| ||| || || Sbjct 2851256 CTTACCCGCAAAGATAAGACGCTGCTGGTCAGGTGGGATACCCTCCTTATCCTGGATCTT 2851315 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || || || ||| ||||||| ||| | ||| ||||| || ||| Sbjct 2851316 AGACTTGACGTTGTCG--ATCGTGTCGCTAGACTCAACCTCCAATGTGATGGTCTTGCCG 2851373 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || ||||| Sbjct 2851374 GTGAGTGTCTTGACGAAGATTTGCAT 2851399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250034582227