Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-20 seq21 109 9e-20 >seq1 Length=4966325 Score = 111 bits (122), Expect = 2e-20 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| ||||||| ||||||| ||| |||||| | |||| Sbjct 491194 TGATCTACGAGGAGACCCGTGGTGTCTTGAAGACCTTCCTCGAGAGCGTTATTCGCGATG 491253 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| || |||||||| || || ||||||||||||||| | || | ||||| | Sbjct 491254 CTGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCCCTCGACGTTGTCTACG 491313 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||||| | || ||||| || ||||| Sbjct 491314 CGCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGTGGTTAA 491357 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||||| | || || |||||||| || ||||||||||| || || Sbjct 491038 GCCAAGCGTCACCGCAAGATCT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCCAT 491096 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||| || ||||||||||| ||||||||| | |||| Sbjct 491097 TCGTCGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATTTCTG 491137 >seq21 Length=561967 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||||| | || || |||||||| || ||||||||||| ||||| Sbjct 451682 GCCAAGCGTCACCGCAAGATCT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 451624 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || ||||||||||| ||||||||| |||| Sbjct 451623 CCGTCGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATCTC 451585 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| |||||| |||||| || || |||| ||| | Sbjct 451531 TGATCTACGAGGAGACCCGTGGTGTTCTGAAGACCTTCCTTGAGGGTGTCATCCGTGACG 451472 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || || || |||||||| || || ||||| ||||| || | || | ||||| | Sbjct 451471 CTGTCACATACACTGAGCACGCCAAGCGCAAGACCGTCACTTCTCTCGACGTTGTCTACG 451412 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || ||||||||||| | | || ||||| || ||||| Sbjct 451411 CCCTTAAGCGTCAAGGCCGCACCCTGTACGGTTTCGGTGGTTAA 451368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074992452311