Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 seq1 114 1e-20 seq19 107 2e-18 seq4 98.7 9e-16 seq2 93.3 4e-14 >seq3 Length=2655511 Score = 116 bits (128), Expect = 3e-21 Identities = 395/599 (66%), Gaps = 21/599 (4%) Strand=Plus/Minus Query 145898 AGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCC 145957 |||||||| |||| |||||| ||||| || | ||| ||||||| | | ||| |||| | Sbjct 1394382 AGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGC 1394323 Query 145958 ATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCA 146017 ||||| | ||| || | |||||| ||||| | | ||||| || | | |||| | Sbjct 1394322 ATAAAGAGATCGGGAATCCACAGAGCGTAGAAGAGATCGCGAGCA---CGAACCTCCTCC 1394266 Query 146018 C--CCATGTTTCG-CTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATA 146074 || || ||| | ||| | || | | ||| ||| ||||||||||| || | Sbjct 1394265 TTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGG 1394206 Query 146075 TAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTG 146131 |||| ||| | || || || ||| ||||||||||| || | || | ||||| Sbjct 1394205 TAGATGGCAAATGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCAGTGTTG 1394146 Query 146132 TTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTG 146191 || | || || | |||||| | ||| | | | ||||| || || | Sbjct 1394145 TTGTAAACACGGAGCATGGGAATCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAG 1394086 Query 146192 GTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGTACTTGGATAT 146250 | ||| || || | || || || || | ||| | |||||| || || |||||| || Sbjct 1394085 GAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCCAATACCGCCAGCAGT-CTTGGAGAT 1394027 Query 146251 AGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCC 146307 ||||| ||| ||| || |||||||| || |||||||| || |||| ||| | Sbjct 1394026 CAACGCGCATGTCTT-GAGTGTGTCGTAGATACCCTCAATGCTGTCTTCCTTC--ATGTC 1393970 Query 146308 GAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCT 146367 || || ||||| || ||||||| | ||| || || || ||| | |||||| Sbjct 1393969 GATGAGGAAGCAGGATGACATCTGTGGGGACGGTGTACCAGCGTTGAAGAGCGTCGGCGA 1393910 Query 146368 CGCGTGCGTAAACATTTTTCGGCT-CATC-ATCCGATACGTTTCGATAGCGTCTTGAATG 146425 |||||| || || | ||| || ||| | || || || |||||||| | | ||| Sbjct 1393909 CGCGTGTGTGAAG-TACTTCTGCGACATGTAGTCG-TATGTCTCGATAGCCTTCTCGATG 1393852 Query 146426 TCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 || || || ||||| | |||||| |||||||||||||| ||||| ||||| || || Sbjct 1393851 TCCTCCATGTGGATGCCAACAGCGACACGCATGAGCATGTGCTGGGGGCGCTCGGCAAC 1393793 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || || | ||||||||| | || | ||| || ||| |||| Sbjct 1395222 TTGACAACCTGGAACTCTCCAGCGAGCACACGACGAGAGTAAATGTTCGAGGTGTAGGGC 1395163 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||| || || || | ||| | || || ||||| ||| || Sbjct 1395162 TCGAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGTAGGCATAGGCGCAACG 1395103 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | |||||||| | |||| || || | ||||| |||| |||| ||||| Sbjct 1395102 AGCAGAGAATTGCGGACACCGTACTGTGCAATCTTCTCCTTCAGCGAGGCCCAGTCCCAG 1395043 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTG 145272 || ||| || | ||| |||||||||||||||| Sbjct 1395042 AGGTCAGTGGGTGTGACGCCCCACATGTCGTACTG 1395008 >seq1 Length=4966325 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| |||||| || | || | || |||||||| ||||||||||| || Sbjct 2851629 CCACCGCGCAGACGCAGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAG 2851688 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 2851689 AGTGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 2851748 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | |||||||| ||||||| Sbjct 2851749 ATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATAGTATCGGATGACTCGACT 2851808 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 2851809 TCGAGGGTGATGGTCTTGCCGGT 2851831 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | ||||||||||| || |||||||||||| Sbjct 2851173 CCACCACGCAGACGAAGAACCAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGAA 2851232 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || |||||||| || || |||| | |||||||||||| || ||| Sbjct 2851233 AGCGTGCGCCCGTCTTCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCAGGTGGG 2851292 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||||| | || | || ||| | ||||| | Sbjct 2851293 ATACCCTCCTTATCCTGGATCTTAGACTTGACGTTGTCGATCGTGTCGCTAGACTCAACC 2851352 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || ||||| || ||||| Sbjct 2851353 TCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 2851399 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||||||||||| || |||||||| || Sbjct 2851401 CCACCACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2851460 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| | ||||||||| ||| |||| | ||||||||||||||||||| Sbjct 2851461 AGTGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 2851520 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||| | | || | || || | ||||| | Sbjct 2851521 ATACCCTCCTTGTCCTGAATCTTCGACTTTACGTTGTCGATCGTGTCCGACGACTCAACC 2851580 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || || ||||| |||||||| Sbjct 2851581 TCCAGCGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||||||| Sbjct 2851912 CCACCACGAAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGAT 2851971 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| |||| || ||||||||||| ||||| Sbjct 2851972 AGAGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 2852031 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | ||||| | ||||| | Sbjct 2852032 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCTGAAGACTCCACC 2852091 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||| | || |||||||| Sbjct 2852092 TCAAGGGTGATCGTCTTACCGGT 2852114 >seq19 Length=853957 Score = 107 bits (118), Expect = 2e-18 Identities = 251/369 (68%), Gaps = 25/369 (7%) Strand=Plus/Minus Query 46238 TCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGG 46297 |||||||||| || || || ||||||||| || || || ||||||||| |||| || | Sbjct 676012 TCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACAG 675953 Query 46298 ACTTTGCGTG---TCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCCGA-CACC 46353 ||||||| || ||||| || | || || || | || ||||| | || Sbjct 675952 ACTTTGCTTGCCTTCTCTTCTCT----CT-GC-TGAATAAC-------CGCCCAAGCAAA 675906 Query 46354 GTG-CTG----AGC-ATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCC 46407 | | ||| ||| || ||| ||||| || | || ||| ||||||| | | | | Sbjct 675905 GAGGCTGTCGCAGCTATCATCACCGAGGCCGTCACAATCGAGCAGGAGTTCCTGTCTGAC 675846 Query 46408 GCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCA-ATGTGCGACTACATCGAGTT 46466 || || || ||| ||||| ||||||||||| | | | |||||| | ||||||||||| Sbjct 675845 GCCCTCCCTTGTGCGCTGCTCGGCATGAACGC-CGGCCTCATGTGCCAGTACATCGAGTT 675787 Query 46467 TGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAATCC 46526 || || || || || || || ||| | | || ||||| | |||| ||| || Sbjct 675786 CGTCGCTGATCGCCTACTGTTGGCTCTTGGCAACCCCAAGCACTACAACGCTACCAACCC 675727 Query 46527 ATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGT 46586 || || || ||| | |||||||| || | ||||| || || || ||||| |||||||| Sbjct 675726 CTTCGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGT 675667 Query 46587 CGGCGAGTA 46595 || || || Sbjct 675666 TGGTGACTA 675658 >seq4 Length=1737036 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| ||| Sbjct 1018870 CCACCACGCAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1018811 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 1018810 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGA 1018751 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 1018750 ATGCCCTCCTTGTC 1018737 >seq2 Length=3786261 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||||||||||| || |||||||| ||| Sbjct 2400734 CCACCACGGAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2400675 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 2400674 AGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 2400615 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 2400614 ATGCCCTCCTTGTC 2400601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011460663680