Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6 140 2e-28 seq9 95.1 8e-15 >seq6 Length=1473139 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 829885 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 829944 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 829945 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 829979 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 838167 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 838226 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 838227 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 838261 >seq9 Length=1201722 Score = 95.1 bits (104), Expect = 8e-15 Identities = 202/302 (67%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| | |||||||||||||| ||| |||| || ||||| |||| || | Sbjct 935186 ATGTCACCGACCCCTTCTACCGCTACAAGATGGAGCGCCTCCAGTCCAAGATCGAAGGCA 935245 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| ||||| || || ||||||||||||||| || | ||||| || | || | | Sbjct 935246 AGGGCAACGGCATCAAGACCGTCATTGTCAACTTGACCAGCGTCGCCAACTCTCTGGCTC 935305 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 | ||| | | || | || || ||||| | ||| ||||| |||||||| | Sbjct 935306 GTCCTCCTTCTCACGTCATCAAGTACTTCGGTTTCGAGCTTGGAGCTCAGACCAACACAA 935365 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426 | ||| | || |||| || | ||||| | || || | |||||| || || | Sbjct 935366 GCCCCAACGATGACCGCTGGATTATCAACGGCGCCCACGACGCCAACAAGCTTCAAGATT 935425 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 || || ||||| || ||||||||| || || | | ||| | ||||| ||||| | Sbjct 935426 ACCTCGATGGCTTCATCTCCAAGTTTGTTCTCTGCAAGAAGTGCAAGAACCCTGAGACGG 935485 Query 6487 AG 6488 || Sbjct 935486 AG 935487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946273347637