Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 179 5e-40 >seq3 Length=2655511 Score = 179 bits (198), Expect = 5e-40 Identities = 411/609 (67%), Gaps = 10/609 (2%) Strand=Plus/Minus Query 62994 CGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACC 63053 ||||||| || || |||| | | || || || || || | || ||||| | | || Sbjct 1394408 CGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCC 1394349 Query 63054 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63113 |||| |||| |||| || || | |||||||||||| |||||||| ||||| || | Sbjct 1394348 ACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCCACAGAGCGTAGAAGA 1394289 Query 63114 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63173 |||| | | | | ||||| || || ||||| | || |||||||| | | | Sbjct 1394288 GATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGTCGAGGAAGCCGAAGA 1394229 Query 63174 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63233 |||| |||||||| || | ||| ||||| | | ||||| || ||||| || |||| Sbjct 1394228 CGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGCGCTTGTTGCCACCCT 1394169 Query 63234 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 63293 | || | || | || ||||| || ||||| | | ||| ||||| | ||| || |||| Sbjct 1394168 GGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAATCAGACCGTTCGATG 1394109 Query 63294 TACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACC 63351 | || ||||| ||| ||||||| ||| |||||||||| | ||| || || Sbjct 1394108 TTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGGACGTTG--AGGCC 1394051 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || || || | || ||||| || |||||| || | || || ||||| ||||| Sbjct 1394050 AATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGTCGTAGATACCCTC 1393991 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC-TAGTTC 63470 || || || ||| |||||| | || || ||| ||||| | ||| ||| || | Sbjct 1393990 AATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCT-GTGGGGACGGTGTAC 1393932 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63529 | || || || | || || || ||||| || || | || | || | |||| | ||| Sbjct 1393931 CAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGTAT 1393873 Query 63530 GTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||| ||||| || || ||| | || || || || || ||||||||||| | ||| Sbjct 1393872 GTCTCGATAGCCTTCTCGATGTCCTCCATG-TGGATGCCAACAGCGACACGCATGAGCAT 1393814 Query 63589 GTGCTGAGG 63597 |||||| || Sbjct 1393813 GTGCTGGGG 1393805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630202069200