Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq4 86.0 5e-12 >seq1 Length=4966325 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || ||||| || | ||||||| | ||| | |||| Sbjct 2851831 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCCGATACTATTGACAACGTCAAGTCC 2851772 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||||||||| ||||| || || || || || | || || |||||||| Sbjct 2851771 AAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 2851712 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||| || |||| || ||||||||||| || || ||||| | || Sbjct 2851711 CAGCTTGAGGATGGCCGTACACTCTCTGACTACAACATTCAGAAGGAGTCCACACTGCAC 2851652 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| |||| ||||||| ||| Sbjct 2851651 CTCGTTCTGCGTCTGCGCGGTGGT 2851628 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| ||| |||| ||||| ||||| | | |||||| | ||| | |||| Sbjct 2852114 ACCGGTAAGACGATCACCCTTGAGGTGGAGTCTTCAGATACCATCGACAACGTCAAGAGC 2852055 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || ||||| || || || || || | || || || ||||| Sbjct 2852054 AAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGCTTGATCTTCGCTGGCAAG 2851995 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| || || | |||||||||||||| || || || || ||| Sbjct 2851994 CAGCTTGAGGATGGACGTACTCTATCCGATTACAACATCCAGAAGGAGTCTACC 2851941 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| | || || || | | | Sbjct 2851399 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACCATCACATTGGAGGTTGAGTCTAGC 2851340 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || || ||||||||||| ||||| || || Sbjct 2851339 GACACGATCGACAACGTCAAGTCTAAGATCCAGGATAAGGAGGGTATCCCACCTGACCAG 2851280 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||| | || || ||||| | |||||||||||| Sbjct 2851279 CAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAAGACGGGCGCACGCTTTCCGATTACAAC 2851220 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 2851219 ATCCAGAAGGAGTCGAC 2851203 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||||||||| || || || || || ||||| || || |||||||| Sbjct 2851543 AAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAG 2851484 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||||| ||||| |||||| | || || |||||||| || || || || || Sbjct 2851483 CAGTTGGAGGACGGCCGCACACTTTCGGACTACAACATCCAGAAGGAGTCGAC 2851431 >seq4 Length=1737036 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| || || || || ||||| || || || ||||| ||| | || Sbjct 1018736 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGA 1018795 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 |||| |||||| ||||||| |||||||| || || || || || Sbjct 1018796 GGATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGAC 1018840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726838796255