Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19 114 3e-20 seq2 98.7 2e-15 seq3 93.3 9e-14 seq5 89.7 1e-12 >seq19 Length=853957 Score = 114 bits (126), Expect = 3e-20 Identities = 247/369 (67%), Gaps = 14/369 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 675676 TCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTA 675735 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| |||||||| | |||||| || | | | ||| || || || ||||| | Sbjct 675736 GCGTTGTAGTGCTTGGGGTTGCCAAGAGCCAACAGTAGGCGATCAGCGACGAACTCGATG 675795 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || | | ||||||||| | || |||||| | || ||| | | | Sbjct 675796 TACTGGCACATGAGGCCGGCGTTCATGCCGAGCAGCGCACAAGGGAGGGCGTCAGACAGG 675855 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC--A 251800 || |||| ||| | | || ||||| | || | ||| | ||| | Sbjct 675856 AACTCCTGCTCGATTGTGACGGCCTCGGTGATGAT-------AGCTGCGACAGCCTCTTT 675908 Query 251801 GCTT-----GTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 |||| ||| | |||| ||| | || || |||| | | ||||| ||||| Sbjct 675909 GCTTGGGCGGTTATTCAGCAGAGAGAAGAGAAGGCAAGCAAAGTCTGTGTGCATGCCCTC 675968 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 ||| ||| ||||| ||||||||| | || || ||||| | ||||| ||| | || Sbjct 675969 GTCACGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATGAGACCACGCTTCTTCAG 676028 Query 251916 CCAGAAGAT 251924 ||||||||| Sbjct 676029 CCAGAAGAT 676037 >seq2 Length=3786261 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||| || |||| ||| | || || |||| ||||| ||||| ||| Sbjct 2366067 GGCGAGGATCTCTGCAACTGCACATTCAACTTGGCCTACGGTGCTAAGATCCTGCTTAAC 2366126 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || |||||| |||| ||||| || | Sbjct 2366127 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTCCTCGGACCCAACGGTTCC 2366186 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 ||||||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 2366187 GGTAAGACCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 2366245 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| ||||| || ||||||||| | |||||| Sbjct 2366246 GAGCGAGGTCAAGACCGTGTACGTCGAGCACGACTTGGACTCC 2366288 >seq3 Length=2655511 Score = 93.3 bits (102), Expect = 9e-14 Identities = 187/272 (69%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||||| ||||||||||| |||||||| | | || | || | || Sbjct 1395427 CTGAGACTGATCGATGAAGGCACCACGGTCAGCAGCCATCTGGATGATGGTACGCTGCGA 1395368 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||| ||||| |||||||| | |||||| || | ||||| | | ||| Sbjct 1395367 GATTTCCCAGACAGTCTTGTAGAGAACCTTGATCTCGTCAGGAATGTTAGGGATGCGCTG 1395308 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCA---C 293290 ||| || || || | |||||| || |||||||||| |||||| ||| || |||| | Sbjct 1395307 GATGGATCCACCCTCGGCAATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCCATGTC 1395248 Query 293291 GAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGC 293350 || ||| | || | | ||| ||| ||||||||| ||||||| |||||||| | Sbjct 1395247 GA-CAAGGTCCTTGAG--CAACC-AAGGGTTGACAACCTGGAACTCTCCAGCGAGCACAC 1395192 Query 293351 GACGGCTGTAAATGTTCGAAGTGATGGGTTCG 293382 |||| |||||||||||| ||| ||| ||| Sbjct 1395191 GACGAGAGTAAATGTTCGAGGTGTAGGGCTCG 1395160 >seq5 Length=1634729 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| |||| ||||| || |||||||| || ||||| | |||||||| ||| | Sbjct 1143902 TCATTGGTGCCAACGGTGCTGGAAAGTCTACTCTTATCAAGATTCTGACTGGTGAGGTCA 1143843 Query 280234 AGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 || || || ||| |||||| |||||| |||| || | ||| || |||| Sbjct 1143842 CTCCCCAGGAAGGAAAGGTTGAGAAGCACCCCAACTTGCGTATTGGATACATCAAGCAGC 1143783 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 ||||||| | ||| | |||| || |||| | ||| || || || ||| | ||||||| Sbjct 1143782 ACGCTTTGGAGCACGTTGAGATGCATATGGAGAAGACACCGAATCAGTACCTCCAGTGGC 1143723 Query 280354 GCTATGCAA 280362 | || |||| Sbjct 1143722 GTTACGCAA 1143714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833810600907