Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 170 4e-37 seq19 149 1e-30 seq5 89.7 9e-13 >seq1 Length=4966325 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| ||||| ||||| || |||||||| || || || Sbjct 2851401 CCACCACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2851460 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || || || |||||||| |||||||| ||||| | || ||||| || || Sbjct 2851461 AGTGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 2851520 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| ||| ||||| ||||| | || || || Sbjct 2851521 ATACCCTCCTTGTCCTGAATCTTCGACTTTACGTTGTCGATCGTGTCCGACGACTCAACC 2851580 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || || || |||||||||||||| |||||||| Sbjct 2851581 TCCAGCGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 2851627 Score = 159 bits (176), Expect = 6e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| | ||| || || || || | |||| ||| || || ||||| || |||||||| || Sbjct 2851166 TTACTGTCCACCACGCAGACGAAGAACCAGGTGAAGTGTCGACTCCTTCTGGATGTTGTA 2851225 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 |||||| || || | ||| ||||| | |||||| || || || || || | || ||||| Sbjct 2851226 ATCGGAAAGCGTGCGCCCGTCTTCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTC 2851285 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406 ||||| || || ||||| || || ||||| | ||||||| ||||| ||||| ||| | Sbjct 2851286 AGGTGGGATACCCTCCTTATCCTGGATCTTAGACTTGACGTTGTCGATCGTGTC-GCTAG 2851344 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || ||||| |||||||| || || ||||| ||||||||||| || ||||| Sbjct 2851345 ACTCAACCTCCAATGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 2851399 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| || | ||| || |||||||| || || ||||| || || ||| Sbjct 2851629 CCACCGCGCAGACGCAGAACGAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAG 2851688 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || | |||||| |||||||| || | | || ||||| || ||| Sbjct 2851689 AGTGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 2851748 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| | ||||||| || || || || | ||| || ||| Sbjct 2851749 ATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATAGTATCGGATGACTCGACT 2851808 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 2851809 TCGAGGGTGATGGTCTTGCCGGT 2851831 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| |||||||| Sbjct 2851912 CCACCACGAAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGAT 2851971 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | | || ||||| || ||| Sbjct 2851972 AGAGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 2852031 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||| |||||||| |||| || || || Sbjct 2852032 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCTGAAGACTCCACC 2852091 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||| || || || |||| Sbjct 2852092 TCAAGGGTGATCGTCTTACCGGTGA 2852116 >seq19 Length=853957 Score = 149 bits (164), Expect = 1e-30 Identities = 295/422 (70%), Gaps = 16/422 (4%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 675639 CATGACACCAGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGC 675698 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| ||| | |||||||||| || Sbjct 675699 AAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTGGGGTTGCC 675758 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || | | ||| ||||| ||||||||||||||||||| ||| ||| | | ||| Sbjct 675759 AAGAGCCAACAGTAGGCGATCAGCGACGAACTCGATGTACTGGCACATGAGGCCGGCGTT 675818 Query 10115 CATGCCAATCATGCG-GCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 |||||| | || ||| || |||| |||||| | | ||| |||| ||| | | ||| | Sbjct 675819 CATGCCGAGCA-GCGCACAAGGGAGGGCGTCAGACAGGAACTCCTGCTCGATTGTGACGG 675877 Query 10174 CTTCCTCGACGAT-GCT-CTTTA-CCACGT--CAAGGGACAGCTTGTTCTCGAGCTTCGA 10228 | || || ||| ||| | | || | | | ||| | || ||| ||| || Sbjct 675878 CCTCGGTGATGATAGCTGCGACAGCCTCTTTGCTTGGG--CGGTTATTC---AGCAGAGA 675932 Query 10229 ATACAGGAGCTCTCCAAACTGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGG 10287 | || || |||| | ||| ||| | ||||||||| || ||||| |||||||| Sbjct 675933 GAAGAGAAGGCAAGCAAAGT-CTGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGG 675991 Query 10288 ACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGAC 10346 | || |||||||||||||| || || || ||||||||| |||| ||| |||||| Sbjct 675992 AGAATGTGAGACCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGACGC-GAACGAA 676050 Query 10347 CC 10348 || Sbjct 676051 CC 676052 >seq5 Length=1634729 Score = 89.7 bits (98), Expect = 9e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469 |||| |||||||| || | | ||| || || || ||||| |||||||||||||| Sbjct 1144151 TTCTGTTCGTAATGGTAGATGTCTGTGCAGACAGCATCGAGGAATCCAGAGTCGTGGGAA 1144210 Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATG-AGCCATGCCACGTT 225528 ||||| | | | | | || ||| |||||||| | | || ||||| || ||||| Sbjct 1144211 ACAATCAAGCTGGTGATCTCAGTGTGGCTCTTGAGGTAC-TCCTGAAGCCAAGCGACGTT 1144269 Query 225529 GCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGAT 225588 | || |||| || || ||||| ||||| || | ||| | |||||| || || || Sbjct 1144270 GGCAACATCCAAATGATTGGTAGGCTCGTCGAGCAACAGAACGTCAGCGCGCATAAGCAT 1144329 Query 225589 GGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCC 225636 || || | | || |||||||| ||||| || || ||||| ||||| Sbjct 1144330 AGCACGGGCCAAAGCGAGCTTCATCTTCCAACCTCCAGACAGAGAGCC 1144377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619784896440